Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08204 ATGACTTCAGCTAAGAACGTGGCAAACGCCGTTGGTGGCAAAACGGCAAGAGCCTGTGACAGTTGCATAACAAAACGAGCACGTTGGTACTGTGCTGCCGACGATGCATTCCTCTGTCAAACTTGTGACTCTTCCGTTCACTCTGCTAATCCACTTGCTCGCAGACATGAAAGGGTCCGCTTGAAAACGGCGTCGTACAAATCCGATGAACTCAAACTCAAAATCAATCGTGGTACATCTTGGCACCATGGTTTCACCAAGAAAGCGAGAACTCCTAGACATGGGAAACACTCTCGTCAAACAACAAAGTCTTCGAGCAATAACGACCCTGGAACGAGAAATCCATTCCATCTTGTGCCAGAAGTTGGATTGGATGAAGTGAATTCCCATGAAGAGAACGAGGAGCAGCTTCTTTATAGGGTTCCTATATTCGATCCCTTTGTTGCTGAACTATGCAGTCCTCCTTCTTCTGTGACTTCAACTGAAGGAGGAACTGCAGCTGTGGATTCCTCTGTTTTTGAAAACAGAGGATGCGTTGCTTTTGCTAATTATAATAACAATCATGAAATGGAAGGCTTGCATGGGCTTCTTCCTTCTGATATTGAACTTGCCGAATTTGCAGCTGATGTTGAGAGCTTGTTGGGGAGAGGGTTAGAAAACGAGTGCATAGGGATGGAGGACTTGGGGCTGATTGATACCAAACAACAAGAGGAGGCAGACTGGGAGTGTTCTGTGGGAAGTGGGAAGGTGAAGGTGGAGGTGGAGGTGGAAGAGAATCCACAAGTGGCTGATTCTTCCAAAGCCTGCAAGGTTGAGGGAGATCACATGGAAATGGAGATGGAGATGGAAATGGGAAGAGAATCAACATTTGAGTTGAACTTTGATTATGATTCTCATGAAGAGGTGAAGGAAAAGGTTGGTTTGGATGTGGCCAAAGATATGGGGAAGAGTGGGGAACACAATGAAAATAATGAGGTGAAAAGGAAGATATCGTTGCAGCTAGATTATGATGCAGTAATCATAGCTTGGGCTAGCCAAAAGTCTCCATGGACTACTGGTGACAAGCCAAACTTGGACCCTGATGAGTGCTGGCCTGACTGCATGGGAAGTTGTGGAACGGAGGTTCATCATCCTTATGGTGAATTGATTGGATATGGGTGTCATCCAGTAATGGGAGACGGAGGCAGAGAGGCAAGGGTGTCAAGATACAGAGAAAAGCGCCGGACAAGGTTGTTCTCTAAGAAAATAAGGTACGAGGTAAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGAAGGTTTGTGAAGAGGGCTTCCTTTGCAGCACCGACATTTCCTATGCTAAGTAAATAA 1356 0.4572 MTSAKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQTCDSSVHSANPLARRHERVRLKTASYKSDELKLKINRGTSWHHGFTKKARTPRHGKHSRQTTKSSSNNDPGTRNPFHLVPEVGLDEVNSHEENEEQLLYRVPIFDPFVAELCSPPSSVTSTEGGTAAVDSSVFENRGCVAFANYNNNHEMEGLHGLLPSDIELAEFAADVESLLGRGLENECIGMEDLGLIDTKQQEEADWECSVGSGKVKVEVEVEENPQVADSSKACKVEGDHMEMEMEMEMGRESTFELNFDYDSHEEVKEKVGLDVAKDMGKSGEHNENNEVKRKISLQLDYDAVIIAWASQKSPWTTGDKPNLDPDECWPDCMGSCGTEVHHPYGELIGYGCHPVMGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTFPMLSK. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08204 451 MobiDBLite consensus disorder prediction 82 100 - -
Seca7g08204 451 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Seca7g08204 451 ProSiteProfiles CCT domain profile. 396 438 IPR010402 GO:0005515
Seca7g08204 451 SMART bboxneu5 14 61 IPR000315 GO:0008270
Seca7g08204 451 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 440 - -
Seca7g08204 451 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Seca7g08204 451 CDD Bbox1_BBX-like 18 61 - -
Seca7g08204 451 MobiDBLite consensus disorder prediction 82 118 - -
Seca7g08204 451 Pfam CCT motif 396 438 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08204 Seca-Chr7 186692353 186694660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08204 5 438 C2C2-CO-like Transcription Factor Family AT1G25440 44.812 1.18e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca7g08204 zf-B_box 9.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08204 - - vun:114190512 575.859