Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08203 ATGAAACTAAGTTGCAATGGATGTCGCATACTTCGCAAAGGTTGTAGTGAAAATTGTATCATAAGGCCCTGCCTTGAGTGGATCAATTCTGCCGAGTCTCAAGCCAACGCTACTCTTTTCCTTGCTAAATTTTATGGTCGCACTGGCTTGCTCAACCTCCTCAGCGCTGCCCCCCAACACCTTGCCTCAGCCGTGTTCAAGTCACTGTTGTATGAGGCTTGTGGTAGATTGGTGAAACCTATTTATGGGTCATTGGGTTTGTTTTGGACTGGAGAGTGGGCCAAATGTGAAGCTGCAGTTAATGCTGTGTTGACTGGGTCTGAGATCAATGATGTGGCGACTTCTAATTGGCAGGCATCAAGGACACTTGGTGGTAATTGTGTTCTCCCTTCCTGTGACATTCGCCACGTTCCTAGAGGCGTTGAGGTGGACGATGTGAACGAGGAAACCCGATCCAGGCAAGTTATCAGACCCAAACCACGAGTGGGTTCAGTGGACTTTGCTGCGTTGTGGAAAACCGGTTGGGAGAGTGACATGGAGGAAACCATGGAGACTTCTTTAGTGAGCCAGGTTGAGTTGAACCGAGCCGGTGAAAACAGGGTGAACTTGGAACTCACTCTTGGCTTCAGTTGCCAATCAAGCAATGGCAAGAACAGACGTTATTGA 666 0.485 MKLSCNGCRILRKGCSENCIIRPCLEWINSAESQANATLFLAKFYGRTGLLNLLSAAPQHLASAVFKSLLYEACGRLVKPIYGSLGLFWTGEWAKCEAAVNAVLTGSEINDVATSNWQASRTLGGNCVLPSCDIRHVPRGVEVDDVNEETRSRQVIRPKPRVGSVDFAALWKTGWESDMEETMETSLVSQVELNRAGENRVNLELTLGFSCQSSNGKNRRY. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08203 221 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Seca7g08203 221 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Seca7g08203 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08203 Seca-Chr7 186687225 186688443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08203 1 153 AS2 family AT1G67100 60.131 4.05e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca7g08203 LOB 6.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08203 - - gmx:100779034 308.145