Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08195 ATGTTTGTGGTTGCAGGTTACAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGAAGAGTGTGGTAAGGTCTATGAGTGTAGATTTTGTTCTCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACAGAGACACTGAACCATGCTCGTCAGCTTGTCTTCCGTAACGATCAAAACCTTGTGGCACAAGCTCCTCCTCACCTAGGATGCTGTCAACCAATAGCACCAGGGGGTTATCATTCATCAGGTAACATGGGAGACCCAACAGTGCCTATGAGATTCCCAAGATACTTCTCTGCTTCATCCTCAACTCACATCCCACCACCACAACCACCTCAACCATATTTATATGCTTCACCTTCAAGGCCAGTGTCTTTTCCCTCACATTTTCCACAGCATCAGGTGAATGATTACCACCATGTGGGTCATGTCATGAGTAGCAGCCAGCCATATAACATGAGCTATGCAGGTGGAGGTGGTGGAGATTCAAGTAGTTACACTTGTGTTGGTGCACCAGTGGGACAAGGGTTGTTGAGGGGAATGGATGGTGGTAAGGACGGGTCACTGCAAAGTCAGGAGGAAGGGTTGAATTGGGGACGGAGCTATTCAGGTCCAGGGGGAACAGCACAGCATCGTTTGGATCCTCCTTCATCGATCAATCGGTTTCAAGATGGTTTTTAA 711 0.4838 MFVVAGYRKKKSGGKDGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDQNLVAQAPPHLGCCQPIAPGGYHSSGNMGDPTVPMRFPRYFSASSSTHIPPPQPPQPYLYASPSRPVSFPSHFPQHQVNDYHHVGHVMSSSQPYNMSYAGGGGGDSSSYTCVGAPVGQGLLRGMDGGKDGSLQSQEEGLNWGRSYSGPGGTAQHRLDPPSSINRFQDGF. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08195 236 MobiDBLite consensus disorder prediction 193 236 - -
Seca7g08195 236 SUPERFAMILY beta-beta-alpha zinc fingers 23 53 IPR036236 -
Seca7g08195 236 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Seca7g08195 236 Gene3D Classic Zinc Finger 8 77 - -
Seca7g08195 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
Seca7g08195 236 FunFam Zinc finger protein STAMENLESS 1 4 73 - -
Seca7g08195 236 PANTHER ZINC FINGER PROTEIN JAGGED 15 185 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08195 Seca-Chr7 186566862 186568025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08195 8 186 C2H2 Transcription Factor Family AT1G13400 49.451 6.34e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g08195 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08195 - - aprc:113871902 353.599