Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08174 ATGGCGGCAGCAACCTCTCACCTCATTGCTTCTTTTATGGTTTTCCATTTTCTTCTCCTGGTTCAAGGTTCCATGAACCCAGATTTCGAAGCTCTTTTGGCCTTCAAAACCGCTTCAGACACCTACAAAAAGCTCACAACTTGGAACACCAACACTGACCCATGCACCTGGGACGGTGTCTCGTGCATCAGAAACCGAGTCTCGCGACTCGTTCTGGAGAACCTCGACCTTCAAGGCTCCATCGAGCCCTTAACTTCTCTGACTCAGCTCCGAGTCCTCAGCCTCAAGGGGAACCGTTTTTCCGGTACCCTTCCGAGTCTCTCCAACTTCACCGCTCTCAAGCTTCTCTTCTTGTCCGATAACGACTTTTCCGGCGAGTTCCCGCTGAGTGTAACTTCGCTTTTCCGCTTGTACCGTCTTGATCTGTCTCACAACAACTTCTCCGGCGAGATTCCGGCGATGGTCAACCGTTTGACCCACCTTCTCACTCTCCGTCTCGACGAGAATCAGTTCTCCGGCAACATTCCCGACGTGAACCTTCCCAGCCTGCAAGACTTCAACGTCTCCGGGAACAGCCTCTCCGGCGAGATACCGAAGTCATTATCGGGTTTCCCCGAATCCTCGTTCGGGCAAAACCCATCTCTCTGCGGAGCGCCGATGGGGAAATGCGCGGCGGAACCGAGCAAACCAGGATCCGAAGGTGCCATTGCTTCGCCATTGGTGCCAGGTAGCAGCATCCCAACAACTGTGTCATCTTCACCGAGCACAATGCCGAAAACACCACCAACAAATAGCGGAAACCATCCAAATGGAGGTTCGAAAATAAGCCCAGTGGCTCTGATAGCCATTATAGTGGGCGATGTTGTTGTCCTTGGCATAGTGTGTGCGCTTCTCTATTGCTATTTCTGGAGAAACTACTCTGCGAAGTTGAAGGAAGGAAAAGTGTCCAAGCTTTTTGAGAGTGAAAAGATTGTATATTCATCGAGTCCGTACCCTGCTCAAGCAGGGTTTGAGAGGGGTCGAATGGTGTTCTTTGAAGGGGAGAAGAGGTTTGAACTTGAGGACTTGCTTAGAGCCTCCGCGGAAATGCTTGGGAAAGGTGGGTTTGGGACGGCGTATAAAGCGGTGCTTGATGATGGCAATGTTGTTGCGGTGAAGAGGCTTAAGGATGCGCAGATTGCAGGGAAGAGGGAGTTCGAGCAGCACATGGAAGTGCTTGGAAGATTAAGGCATCCCAACATTGTTAGCTTGAGGGCTTACTATTTTGCAAGAGATGAGAAGCTTCTTGTCTATGATTACATGCCCAATGCCAGTGTTTTCTGGCTCCTTCACGGGAACCGAGGACCCGGAAGAACCCCACTTGACTGGACCACCAGGCTTAAAATAGCAGCTGGAGCAGCACGAGGTGTGGCTTTTATTCACAACTCCTGCAAGTCCCTTAGGCTCACCCATGGTAACATCAAATCCACCAACATCCTCCTTGACAAGCAGGGGAATGCACGCGTCTCAGATTTTGGGCTTTCCATATTTGCGGGCCCGGGCCCAGTGGGTGGGAGATCCAACGGCTATCGTGCTCCGGAGGCATCGGACGGTCGAAAACAATCCCAGAAGTCTGACGTGTACTCTTTTGGGGTTCTGCTGCTGGAGCTGCTCACGGGAAAGTGTCCCTCCGTGGTGGACAATGGTGGGCCAGCCAGTGGCTATGGTGGGGTAGTGGACCTACCAAGGTGGGTCCAGTCAGTGGTCAGAGAGGAATGGACGGCTGAGGTTTTTGATTTGGAGTTGATGAGATACAAGGATATTGAAGAGGAGATGGTGGGGCTGCTTCAGATAGCTATGTCTTGTACTGCGGCTGCACCTGATCAACGGCCCAGGATGAGCCACGTGGTTAAGATGATTGAGGAGTTGCGTGGGGTTGAGGTGTCTCCGTGTCATGACACGTTGGACTCGGTGTCTGAGTCACCTTCCTTGTCTGAAGATGCGTGTGGAACTAGTCAGTGA 2001 0.5207 MAAATSHLIASFMVFHFLLLVQGSMNPDFEALLAFKTASDTYKKLTTWNTNTDPCTWDGVSCIRNRVSRLVLENLDLQGSIEPLTSLTQLRVLSLKGNRFSGTLPSLSNFTALKLLFLSDNDFSGEFPLSVTSLFRLYRLDLSHNNFSGEIPAMVNRLTHLLTLRLDENQFSGNIPDVNLPSLQDFNVSGNSLSGEIPKSLSGFPESSFGQNPSLCGAPMGKCAAEPSKPGSEGAIASPLVPGSSIPTTVSSSPSTMPKTPPTNSGNHPNGGSKISPVALIAIIVGDVVVLGIVCALLYCYFWRNYSAKLKEGKVSKLFESEKIVYSSSPYPAQAGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIAGKREFEQHMEVLGRLRHPNIVSLRAYYFARDEKLLVYDYMPNASVFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLRLTHGNIKSTNILLDKQGNARVSDFGLSIFAGPGPVGGRSNGYRAPEASDGRKQSQKSDVYSFGVLLLELLTGKCPSVVDNGGPASGYGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMSCTAAAPDQRPRMSHVVKMIEELRGVEVSPCHDTLDSVSESPSLSEDACGTSQ. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08174 666 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 638 IPR046959 -
Seca7g08174 666 SUPERFAMILY Protein kinase-like (PK-like) 362 633 IPR011009 -
Seca7g08174 666 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 434 643 - -
Seca7g08174 666 Gene3D Ribonuclease Inhibitor 179 224 IPR032675 -
Seca7g08174 666 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Seca7g08174 666 MobiDBLite consensus disorder prediction 644 666 - -
Seca7g08174 666 MobiDBLite consensus disorder prediction 221 270 - -
Seca7g08174 666 SUPERFAMILY L domain-like 44 204 - -
Seca7g08174 666 Gene3D Phosphorylase Kinase; domain 1 337 433 - -
Seca7g08174 666 Gene3D Transferase(Phosphotransferase) domain 1 434 649 - -
Seca7g08174 666 FunFam Nuclear pore complex protein NUP107 25 177 - -
Seca7g08174 666 CDD STKc_IRAK 364 636 - -
Seca7g08174 666 ProSiteProfiles Protein kinase domain profile. 358 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08174 666 ProSitePatterns Protein kinases ATP-binding region signature. 364 396 IPR017441 GO:0005524
Seca7g08174 666 Gene3D Ribonuclease Inhibitor 26 178 IPR032675 -
Seca7g08174 666 MobiDBLite consensus disorder prediction 647 666 - -
Seca7g08174 666 Pfam Protein kinase domain 362 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08174 666 MobiDBLite consensus disorder prediction 242 270 - -
Seca7g08174 666 FunFam pollen receptor-like kinase 1 330 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08174 Seca-Chr7 186236068 186238765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08174 28 666 Receptor kinase-like Gene Family AT1G68400 67.884 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca7g08174 Pkinase 8.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08174 - - cam:105851082 1089.72