Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08172 ATGGGGCAGAGGAGAACAACTGGACAACAACTCCTTTATACACAAACATGTATACTCCAATTGCAGCTCAAACCCTCAGCTCACAATTTTTTATATATTTCTCTTATCGCTCTCCAATACTTTCCATATAGAACTAGGCAAGTCTACAAAATGAACCAAAAAAGCCTCTTATTTACCCCCAAGGCCCTCTATTCTCCCCTGATTTATTCATACATCATCCTCTTCAATCTCCTAACCAGAACCACTCTGTGCTTTGTGGAGCCTAAGTTCGAAGCATGTCAACCCAGAACCTGCGGCAACAACCAAAGTATAAGCTACCCGTTCTACATCCAAGGAGTACAAGAACCCTTTTGTGGGTACCCTGGTTTCGGTGTCTCTTGTAGCAATGATGGCTTCCCAATCCTCAATCTGTCTAATACCCTTCACATCATCGATCAAATATTGTATCAAAATCTGTCGCTACGAGTGTCTAATGCTGTGTTATCGACATCAAACACAACCACAGGTTGTCCTTTTCCTACCAAGAACCTTACTCTTCCCAGCATCTTCCATTTTGTTCCCAACCAAAAGGACGTGAGATTGTTCTTTGACTGCGACTTACCATCGGTGCCCAGAGAGCTGCAAGAGCAGATAATTGAGTGTTCCGCAGATAGGGAAAAGAGTTCAGTTCTGGCATTGTATAAGGATGATAAAAATCTAAGCTTTGCGTCAAAGAATTGCAAGGGTGAAGTGGTGGATGTGACGGTGGAAGATGATGATGATGATGGGAAAGGAGGGATTGAAGAGGCACTGAGAAAAGGGTTCTGGTTGAATTGGACTGCCAGTGACTGCAGGGAATGCAACAGCACTGGAGAGGCTCAGCCAAAGAAGAAGAGAACAAAGTTGAACCTGCTACTTGGACTTGGAATAGCTGTTGCATTGCTGTTGCTCTTGGCTTTGAACCTTACATTTCGTTGCTTGCGGAAACAAAATTGTGCGACCGGTGAACTGTTTATTGAGAGGTTCCTAAAGCAACACGGTTCTCTTCCAACCACAAGGTACAGTTACTCTCAGATAAAGAAAGTCACTGATTGTTTCAAAGTCAAATTAGGCGAGGGAGGATATGGAAGCGTATATAAAGGAAAGCTACAAGATGGGAGTTCTGTTGCAGTCAAGGTTTTAAATGAACTTAAAGGAACTGGGGAGGAATTCATCAATGAAATTGCAAGCATTAGCAGGACATCTCATGTTAACATTGTCACTCTTGTGGGGTTTTGTTTCCAAGGTTCAAAACGAGCTTTAGTTTATGAATTCATGCCTAATGGATCCCTTGAGAAGTTCATATGTGAAGAAACTCCAATGTTAGTTGGTCAGCAATTGGCATGCAAGACTTTGTATGATGTTGCCATTGGTGTTGCTCGTGGATTGGACTATTTGCACAGAGGCTGCAATACTAAAATCTTGCATTTTGATATCAAACCTCACAACATACTACTTGATGAAGATTTCTGCCCAAAGATTTCAGATTTTGGACTTGCTAAAATATGTCCAAGAAAAGAGAGTATTGTGTCCATGTTGGGTGCAAGGGGAACGATTGGATATATTGCTCCAGAGGTGTTTTGTAGGACTTTTGGTGGGGTGTCTCATAAATCTGATGTATACAGTTATGGAATGCTAGTTTTAGAAATGGTCGGAGGGAGACAGAATAAAAATGTTGAACTTGATTGTTCTAGTGAGATATATTTTCCACATTGGATTTATAAGAAACTTGAATTAGATCAAGATTTTGGATTTCGGTGTATTGAAAATGAAAGTGACAGAGTAATTGTGAGAAAGATGATCATGGTGAGCTTATGGTGCATACAAACGGACCCTTTAGCTCGACCATCTATGAGTAAAGTGGTGGAGATGCTAGAAGGAAGCCACGAGTCCTTGAAAGTACCACCTAAACCCTTCTTGCGTTCTCCACCAACATCTCCAGCACATTACTCCAGCTCAAAGTGTCCGCAGTCTTTTCATTGTGGAAGTCATGGGCAGATCAGCTTTCCTTTCACAGACAGAGAGCACCCACAATGTGGCGCGTTATTAGCCATACATGGCTGTCATGTAAAGGATCCAGCTGCTCCCAAAACCATCCAACTAACCAACACGCCATCAAAACGGTCTTTTAATGTTCTCCTCATGGGTCGTTCTTCCATAACGGTCAATGATAATGATCAACAAAAAAATTTGGAGAACAATAGTTGCAAAACCTTCTTCAACAATTTTACTCTTCCTCCCCTCTCTCCTTTAGCTTCTTTCTATGTAAGTAATAACATAACTATGTTCAGCCTTCCAAATACTAACATGTCTCCCAGTTTCGAATGGCCAAGTTTTTTGGCATCGCCATCCTGTTCAGCGGTTCAGGTTGCAGTAAAAGGGGTGCCAACTGATAACCCCTTTGATTTTCTAGCTCCTGAGCTCCTCATTGAAGTACAACTATCTGATGATTGTGACCATTGTCTTCGTCAAGAAGGGGGACAATGTCAACTTGACATTCAAGGAAAATTCTATTGCTCCAAAGGGAGTAGAGGTTGGGTTGTGAAAATGGTACTAGGGCTCGGAACAGGAGCATCACTTTCTCAGCCTTCTAAATTAGTCTTCCTAATTCGAATAACCTCTCCAGCTGTTACAGTTGCTCTATTGCTAGTAGTGGTCAAGATCCGCTATACAATATGGAAGAAGCAAAATCCAACCAATCTACTCATTGAGATCTTTTTGAAGAGACATGGATCCCTTCAAATCAAGAGGTATAATTATTCTGAGATAATGAAAGTGACCAATTCTTTCAGAAACAAATTAGGCCAGGGGGGATTCGGCAGTGTATACAAAGGACAATTACAGGATGGACGTTATGTTGCAGTGAAAGTCCTAAATAAACTGAAAGATAATGGTGAGGAGTTCATCAATGAAGTTGCAAGTATCAGCAGAACTTCACATGTTAACATTGTTACTCTTCTTGGGTTTTGCTTCGAAGTGCTGAGCGTCGTTCTGATTTTGTTTTCATGGGTTGTGATTGCAGCACAAGGTGGGAAATGTCCATCTTTGATGGAATGCGGAGATATCGGTAACATCACTTTCCCTTTTACGAGCACACAGCACCCTGACTGCGGCATCTTTGTGATACATGGCTGCGATGACCGTGAACCAAATGTCCAAAAAAGCATAAAGAATAAAGAGAGATGGTTTGACATTGTGGACCTTCAACAGTTTACAATCACCATTAGAGATGATAAACTCCATGACATGTTGCTACAAAGAAGTTGCCAGATCTTCGATTACGAGTCTAGTTTCACGGTAGACACGCCTTTGGCTTCTTCTCATATGAAATATAATGTATCCGTCTTCCGATGCAACGATACCACCCATCTTCCGCAATACTATTCTGTTTCTAATGTTACCGCAATATGCAGAAACGATACACGGTATGACATTTCAGGCATCAAGGGTGAAAGTGTTGTGGTGGTCTCCGACGACCCAGACCCCTCCAATAATCTCAAACGATATTGTCCAGAGCTTCAGCTTCCAACGAGCTACCAGGTGAGTCGCAATCTTGATCCGAAGGACCTTTTTAACTTCACGACTGCTGATATCGCCATCGAGATACAACTGTCTCCGGACTGTGTTAGCTGTCACGATATTCATGGAGGCCAATGTCGACTTGACAACGGCGGCAAGTTTTATTGTCATCAAGTTGCATCTGCCTCTGGAGTAGGAGTTTTGATAATCTTGGCTTGGTGCTTTACAAGACGGTTGTTCAACAAGAAAAACCCCACACACCAAGTAATTGAGATGTTTCTAAAAAGCCATGGTCACCTTGCAGCCAAAAGATACAGTTATTTAGAGATAAAGAAGGCTACCAATTCCTTCAAAAACAAATTGGGTCAAGGAGGATATGGTAGTGTATACAAAGGGAAGTTACATGATGGAAGTCTTGTGGCAGTAAAAGTATTAAGTGAATCCAAAGGTAATGGGGAGGAATTCATCAATGAAGTTGCTAGTATCAGTGTCACTTCTCATGTTAACATTGTTAGTTTAGTGGGATTCTGTTTGGAAGGTTCTAAAAGAGCTCTCATATATGAATACATGCCTAATGGATCACTTGAGAATTTCATATATGAAGACAAAGATCCATTAAAGCTCAATCTCTTATTGAGTTGCAAAACTATCTACAACATTGCAATTGGAGTGGCTCGAGGATTAGAGTATTTGCACAAGGGTTGCAATACTAAAATCTTGCACTTTGATATAAAACCTCACAATATATTGTTAGACGAGTATTTCTGTCCCAAAATTTCCGATTTTGGACTTGCAAAAGTATGTCCAAGAAATGAAAGTATTGTGTCCTTATTGGGTACCAGAGGAACTGCTGGATACATTGCTCCTGAATTGTTCTCCAGAAATTTTGGTGGGGTCTCCCACAAATCTGATGTATACAGCTATGGAATGATGGTTTTAGAAATGGTTGGGGGAAGAAAGAATGCCAATGTTGAAGAAGTTGAATGCTCAAGTGAAATATATTTTCCACACTGGGTTTACAAGCGTCTAGAACTCAATCAGGAGCCTAGATTGAGATCCATCAGAAACGCAATTGATAAAGAAATGGTAAGAAAGATGATTATAGTGAGCTTATGGTGCATACAAACTGACCCATCAAATAGGCCAGCAATGAGTAAAGTGGTAGATATGATGGAAGGAAGCTTGGAATCCTTGCAAATACCACCAAAACCTTATCTCTCTTCTCCTCCAAGATCTCCCCCGAGACCATCAGATTATAACACACAGACATCTCAAGCTTTTTATCCTTGA 4827 0.411 MGQRRTTGQQLLYTQTCILQLQLKPSAHNFLYISLIALQYFPYRTRQVYKMNQKSLLFTPKALYSPLIYSYIILFNLLTRTTLCFVEPKFEACQPRTCGNNQSISYPFYIQGVQEPFCGYPGFGVSCSNDGFPILNLSNTLHIIDQILYQNLSLRVSNAVLSTSNTTTGCPFPTKNLTLPSIFHFVPNQKDVRLFFDCDLPSVPRELQEQIIECSADREKSSVLALYKDDKNLSFASKNCKGEVVDVTVEDDDDDGKGGIEEALRKGFWLNWTASDCRECNSTGEAQPKKKRTKLNLLLGLGIAVALLLLLALNLTFRCLRKQNCATGELFIERFLKQHGSLPTTRYSYSQIKKVTDCFKVKLGEGGYGSVYKGKLQDGSSVAVKVLNELKGTGEEFINEIASISRTSHVNIVTLVGFCFQGSKRALVYEFMPNGSLEKFICEETPMLVGQQLACKTLYDVAIGVARGLDYLHRGCNTKILHFDIKPHNILLDEDFCPKISDFGLAKICPRKESIVSMLGARGTIGYIAPEVFCRTFGGVSHKSDVYSYGMLVLEMVGGRQNKNVELDCSSEIYFPHWIYKKLELDQDFGFRCIENESDRVIVRKMIMVSLWCIQTDPLARPSMSKVVEMLEGSHESLKVPPKPFLRSPPTSPAHYSSSKCPQSFHCGSHGQISFPFTDREHPQCGALLAIHGCHVKDPAAPKTIQLTNTPSKRSFNVLLMGRSSITVNDNDQQKNLENNSCKTFFNNFTLPPLSPLASFYVSNNITMFSLPNTNMSPSFEWPSFLASPSCSAVQVAVKGVPTDNPFDFLAPELLIEVQLSDDCDHCLRQEGGQCQLDIQGKFYCSKGSRGWVVKMVLGLGTGASLSQPSKLVFLIRITSPAVTVALLLVVVKIRYTIWKKQNPTNLLIEIFLKRHGSLQIKRYNYSEIMKVTNSFRNKLGQGGFGSVYKGQLQDGRYVAVKVLNKLKDNGEEFINEVASISRTSHVNIVTLLGFCFEVLSVVLILFSWVVIAAQGGKCPSLMECGDIGNITFPFTSTQHPDCGIFVIHGCDDREPNVQKSIKNKERWFDIVDLQQFTITIRDDKLHDMLLQRSCQIFDYESSFTVDTPLASSHMKYNVSVFRCNDTTHLPQYYSVSNVTAICRNDTRYDISGIKGESVVVVSDDPDPSNNLKRYCPELQLPTSYQVSRNLDPKDLFNFTTADIAIEIQLSPDCVSCHDIHGGQCRLDNGGKFYCHQVASASGVGVLIILAWCFTRRLFNKKNPTHQVIEMFLKSHGHLAAKRYSYLEIKKATNSFKNKLGQGGYGSVYKGKLHDGSLVAVKVLSESKGNGEEFINEVASISVTSHVNIVSLVGFCLEGSKRALIYEYMPNGSLENFIYEDKDPLKLNLLLSCKTIYNIAIGVARGLEYLHKGCNTKILHFDIKPHNILLDEYFCPKISDFGLAKVCPRNESIVSLLGTRGTAGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGGRKNANVEEVECSSEIYFPHWVYKRLELNQEPRLRSIRNAIDKEMVRKMIIVSLWCIQTDPSNRPAMSKVVDMMEGSLESLQIPPKPYLSSPPRSPPRPSDYNTQTSQAFYP. 1609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08172 1608 Pfam Protein kinase domain 361 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08172 1608 Pfam Protein kinase domain 1297 1568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08172 1608 ProSiteProfiles Protein kinase domain profile. 1294 1585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08172 1608 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1266 1591 IPR045874 GO:0004672
Seca7g08172 1608 SUPERFAMILY Protein kinase-like (PK-like) 918 999 IPR011009 -
Seca7g08172 1608 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Seca7g08172 1608 Pfam Wall-associated receptor kinase galacturonan-binding 93 157 IPR025287 GO:0030247
Seca7g08172 1608 Gene3D Transferase(Phosphotransferase) domain 1 1369 1579 - -
Seca7g08172 1608 Gene3D Transferase(Phosphotransferase) domain 1 432 641 - -
Seca7g08172 1608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1418 1430 IPR008271 GO:0004672|GO:0006468
Seca7g08172 1608 ProSiteProfiles Protein kinase domain profile. 357 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08172 1608 FunFam serine/threonine-protein kinase PBS1-like 333 431 - -
Seca7g08172 1608 SMART serkin_6 1294 1570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08172 1608 SMART serkin_6 357 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08172 1608 ProSitePatterns Protein kinases ATP-binding region signature. 1300 1322 IPR017441 GO:0005524
Seca7g08172 1608 MobiDBLite consensus disorder prediction 1578 1608 - -
Seca7g08172 1608 FunFam serine/threonine-protein kinase PBS1-like 1265 1368 - -
Seca7g08172 1608 Pfam Protein tyrosine and serine/threonine kinase 936 1005 IPR001245 GO:0004672|GO:0006468
Seca7g08172 1608 SUPERFAMILY Protein kinase-like (PK-like) 341 632 IPR011009 -
Seca7g08172 1608 FunFam PR5-like receptor kinase 432 643 - -
Seca7g08172 1608 Pfam Wall-associated receptor kinase C-terminal 218 283 IPR032872 -
Seca7g08172 1608 Gene3D Phosphorylase Kinase; domain 1 336 431 - -
Seca7g08172 1608 Gene3D Phosphorylase Kinase; domain 1 913 1006 - -
Seca7g08172 1608 Gene3D Phosphorylase Kinase; domain 1 1271 1368 - -
Seca7g08172 1608 FunFam PR5-like receptor kinase 1369 1582 - -
Seca7g08172 1608 SUPERFAMILY Protein kinase-like (PK-like) 1275 1570 IPR011009 -
Seca7g08172 1608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08172 Seca-Chr7 186206367 186222810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08172 661 998 Receptor kinase-like Gene Family AT5G38260 30.208 7.69e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca7g08172 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08172 - - mtr:11418569 947.962