Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08171 ATGCTGCTTCTCTTGGCGGCTGAAGATGGGAATGGAGAGTGTCCACCTTCATTTAGTTGTGGATATCTTGGCAATATCACCTTCCCTTTCACTAAAACAGAACGCAATGACTGTGGCTTATTCGCCATACATAATTGTGATGATCCTAATCCAGTGAAGCCCAGAATGATCCAATTTCAGAATCAAAGGAAATGGTTTCAGGTTGTAGCCCTTTCTCAGTCTCCCCGTAGTAGTACTTTCAGAGACAAGGATCAGTATGAACTTCTGCAATCCAGAAGTTGCGAAGCTTTCAGATATAACTATACTTTTCCTTCCACCTTTCCCTTTGGTTCTTTTCATATAGATGCCAATATAACCATGTTCAGGTGCAACCGCACCCTCCATGTCAAGTCCCCAACATATATGTATAATTATACAAGGTGCCCTGACTACCATCTCTACTACAATTCATTCGTCACAACTGATGATGCCTTGACACTGACAGCATGTACAAAGGTTCAGCTTCCAATTAAAGATGTCCCTGACGCTAGAGACCCATTTACATTCCTAACTGGTGATATATTCATTGAAGTAAAAATAACAGAAGAATGTGAAGATTGTCACTACAACCAAAGAGGGCAGTGTCAACTTGACAGCAGAGACAGATTTTATTGTGCCCACAGTTACGATAAAACCAGAAAGAAGATGCCGATAGTGGCAAGGGCAGCAGGCTCGGTGGTCGGAATTGCAGTGTTGATAGTCTTGGCTTGTTGCTTTAGGAGAAAGATCTTCCCTCCTTCATATCTTTCATTTTGGAAGGTGAATCCAACCCATCGGATTATTGAGGACTTTTTGAAGGAGCACGGACCCCTTCCTGCGGCTAGGTACAGTTATTCACAAGTTAAGAAAGTGACCAATTCTTTTAGAAACAAATTAGGCCAAGGAGGATTTGGATGTGTATACAAAGGGAGGTTACATGATGGAAGTATTGTTGCAGTGAAGGTTTTAAGTGAATCAAAAGGTAATGGAGAGGATTTCATCAATGAAGTTGCCAGTATTAGTAGGACTTCACATGTTAACATTGTTAGACTTTTGGGGTTCTGCTTGGACGGTTCTAAAAAGGCACTAATTTACGAATTTATGCCTAATGGATCTCTTGAGAAGTTTATATATGAAGACAAAAATCCATTGAAAGATGATCGCCAATTGGATTGCGAAACATTGTATGATATTGCAGTTGGCGTTGCTCGTGGATTAGAGTACTTGCATAGAGGTTGCAACAGCAGAATCTTGCATTTTGACATAAAACCTCACAACATATTACTAGATGAGGATTTCTGTCCAAAAATTTCAGATTTTGGACTTGCCAAAATCTGCCCAAGAAAAGAAAGTACTGTATCGGTGTTTGGTGCCAGAGGGACTGCAGGCTATATTGCCCCAGAAGTATTCTCTAGGAATTTTGGTTCAGTATCACATAAGTCAGATGTCTACAGTTATGGAATGATGGTATTAGAAATGGTTGGGAGGAGAAAAAATATTAAAGTTGAGGTTGACCATTCTAGCGAAATATATTTTCCTCATTGGATCTACAATCGTCTTGAATCAGATAAGGAGCTTGGCTTGGGGAATATAAGAAATAAAAGTGATGATGAAAAGGTGAGAAAGATGACAATAGTGGGCTTGTGGTGCATACAAACCAAACCTTCAACTCGACCAGCCATAAGTAAAGTGGTGGAGATGCTGGAAGGTAGAATTGAGTTGTTGCAAATGCCACCTAAACCTTTTTTGTCTTCTCCTTCAACCTCTCCAGTCCATTTGTCAGCAACTCCATCACCGTGTACAACAACGCCATCGCCGCTTCCAATGGTGAACTCCACTAATGTCACCACACCAACAACCTGTGAAAGAATTTAG 1893 0.4068 MLLLLAAEDGNGECPPSFSCGYLGNITFPFTKTERNDCGLFAIHNCDDPNPVKPRMIQFQNQRKWFQVVALSQSPRSSTFRDKDQYELLQSRSCEAFRYNYTFPSTFPFGSFHIDANITMFRCNRTLHVKSPTYMYNYTRCPDYHLYYNSFVTTDDALTLTACTKVQLPIKDVPDARDPFTFLTGDIFIEVKITEECEDCHYNQRGQCQLDSRDRFYCAHSYDKTRKKMPIVARAAGSVVGIAVLIVLACCFRRKIFPPSYLSFWKVNPTHRIIEDFLKEHGPLPAARYSYSQVKKVTNSFRNKLGQGGFGCVYKGRLHDGSIVAVKVLSESKGNGEDFINEVASISRTSHVNIVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEDKNPLKDDRQLDCETLYDIAVGVARGLEYLHRGCNSRILHFDIKPHNILLDEDFCPKISDFGLAKICPRKESTVSVFGARGTAGYIAPEVFSRNFGSVSHKSDVYSYGMMVLEMVGRRKNIKVEVDHSSEIYFPHWIYNRLESDKELGLGNIRNKSDDEKVRKMTIVGLWCIQTKPSTRPAISKVVEMLEGRIELLQMPPKPFLSSPSTSPVHLSATPSPCTTTPSPLPMVNSTNVTTPTTCERI. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08171 630 SMART serkin_6 299 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08171 630 PANTHER RUST RESISTANCE KINASE LR10-RELATED 270 593 IPR045874 GO:0004672
Seca7g08171 630 FunFam PR5-like receptor kinase 374 586 - -
Seca7g08171 630 CDD STKc_IRAK 305 576 - -
Seca7g08171 630 FunFam serine/threonine-protein kinase PBS1-like 274 373 - -
Seca7g08171 630 SUPERFAMILY Protein kinase-like (PK-like) 283 575 IPR011009 -
Seca7g08171 630 MobiDBLite consensus disorder prediction 591 630 - -
Seca7g08171 630 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Seca7g08171 630 Pfam Protein kinase domain 303 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08171 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Seca7g08171 630 MobiDBLite consensus disorder prediction 592 630 - -
Seca7g08171 630 Gene3D Transferase(Phosphotransferase) domain 1 374 589 - -
Seca7g08171 630 Gene3D Phosphorylase Kinase; domain 1 278 373 - -
Seca7g08171 630 ProSiteProfiles Protein kinase domain profile. 299 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08171 Seca-Chr7 186200990 186204137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08171 4 605 Receptor kinase-like Gene Family AT5G38260 38.352 2.55e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca7g08171 Pkinase 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08171 - - tpra:123901115 839.721