Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08170 ATGGCCTCCGGGGAAGGGAGGTGGCATCATCATGATCTTGTGCCTCTTGCTGCATTGCTTAAGAGAGAGATGAAGAGTGAGAAGATGGAGAAGCCTACTGTGAGGTTTGGACATGCTGCTCAGTCTAAGAAAGGGGAGGATTACTTTCTAATTAAGACTGATTGTCAGCGAGTGCCTGGGAACTCTTCATCATCCTTTTCTGTATTTGCGATCTTTGATGGACACAACGGAAATGCTGCTGCCATTTTTACTAGGGAGCACTTGTTAAATCATGTGTTGGGTGCTCTTCCTCGAGGACTTGGGCGTGATGAGTGGTTGCAAGCTTTACCTAGGGCATTGGTTGCTGGATTTGTTAAGACTGATAAGGAATTTCAGGCCAGAGGAGAAACTTCTGGAACCACAGCCACGTTTGTGATAGTGGATAGGTGGACTGTGACAGTTGCATCTGTTGGAGATTCTCGTTGTATACTAGATACCCAGGGTGGTGCTGTTACCACCTTAACTGTTGATCACAGACTTGAAGAGAACATTGAAGAGAGGGAACGTGTTACTGCAAGTGGAGGTGAAGTTGGGAGGCTTAGCATTGTTGGTGGTGCTGAGATTGGTCCCCTTCGATGCTGGCCAGGAGGTCTATGCCTCTCTAGGTCAATAGGAGACATGGATGTTGGGGAGTTTATTGTTCCAATACCATATGTCAAACAAGTGAAGCTATCCAATGCTGGTGGGAGGCTTATAATTGCTTCTGATGGCATATGGGATGCTCTATCCTCAGACATGGCTGCAAAATCTTGCCGTGGTTTGCCTGCTGAACTTGCTGCTATGCAGGTGGTCAAGTTGGCATTTCCCCTCACAGATGTTTATATTGCCGCTGTTATTCAGGAAGCACTAAGAACGAGAGGGTTAAAGGATGATACGACTTGCATAGTTGTTGACATAATCCCACCTGATAATGAATTGCCACCAACACCCCCTTCCAAAAAGCGGAACAAGCTGAGGGATTTTTTGTTCAGGAAAAGGTCCCGTGATTCTGCTGGTAAGCTATCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTATTTGAAGAAGGATCAGCAATGCTTGCTGAAAGATTAGGAAATGATGAGAACAACACAGGGCAATCAACATCTGGCCTTTTTGTCTGTGCTGTATGCCAAGTTGATCTTGCTCCAAGTGAGGGCATCTCTGTCCATGCAGGTTCCATTTTCTCTACCAGCTCAAAGCCATGGAAAGGTCCTTTTCTATGTTCCGATTGTCGCAATAAGAAGGATGCTATGGAAGGGAAACGTCCTAGTGGAGTTAAAGTGTCATAG 1335 0.4554 MASGEGRWHHHDLVPLAALLKREMKSEKMEKPTVRFGHAAQSKKGEDYFLIKTDCQRVPGNSSSSFSVFAIFDGHNGNAAAIFTREHLLNHVLGALPRGLGRDEWLQALPRALVAGFVKTDKEFQARGETSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVTTLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAAMQVVKLAFPLTDVYIAAVIQEALRTRGLKDDTTCIVVDIIPPDNELPPTPPSKKRNKLRDFLFRKRSRDSAGKLSKKLSAINIVEELFEEGSAMLAERLGNDENNTGQSTSGLFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWKGPFLCSDCRNKKDAMEGKRPSGVKVS. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08170 444 Gene3D - 35 316 IPR036457 -
Seca7g08170 444 ProSiteProfiles PPM-type phosphatase domain profile. 28 312 IPR001932 -
Seca7g08170 444 FunFam probable protein phosphatase 2C 5 35 317 - -
Seca7g08170 444 SMART PP2C_4 27 310 IPR001932 -
Seca7g08170 444 CDD PP2Cc 36 312 IPR001932 -
Seca7g08170 444 PANTHER PROTEIN PHOSPHATASE 36 311 IPR015655 GO:0004722|GO:0006470
Seca7g08170 444 SMART PP2C_SIG_2 51 312 IPR001932 -
Seca7g08170 444 SUPERFAMILY PP2C-like 40 312 IPR036457 -
Seca7g08170 444 Pfam Protein phosphatase 2C 61 265 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08170 Seca-Chr7 186195860 186200185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08170 1 443 PP2C-type Phosphatase Gene Family AT1G68410 76.275 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08170 - - gmx:100779571 802.357