Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08159 ATGGTTTCAAGGTCATATTCTAACTTGTTAGAACTTACTTCCTGTGACTCTCCAACTTTTGGTCGTGAGAAGAAAAGGCTTCCTCGAGTGGCAACTGTTGCTGGAGTACTGTCTGAACTAGATGATGAGACCAGCAACAGTGTTGGCTCTGATGCTCCCTCCTCCATTTCTCAAGAGAGGATGATCATTGTTGGTAACCAGCTTCCATTAAGGGCAAACAGAAAAGAGAATGGTACTTGGGAATTCAACTGGGATGAGGACTCACTTCTTTTACAGCTGAAAGATGGTCTTGGAGATGATGTGGAAACTATCTATATTGGTTGTCTTAAAGAAGAAATTGAGCCAAGTGAGCAAGATGATGTTGCTCAATACTTGCTTGACACTTTCAAATGTGTACCCACTTTCCTCCCTCCTGAGCTTTTTAGTAAATTCTATCATGGATTCTGCAAACAACATCTATGGCCTTTATTTCACTACATGCTTCCACTGTCACCTGATCTTGGTGGTCGGTTTGATAGGTCCCTTTGGCAGGCTTATGTTTCTGTGAACAAGATATTTGCAGATAAAGTGATGGAAGTCATTAGCCCTGATGATGACTTTGTGTGGGTTCATGACTACCACTTGATGGTTCTTCCAACATTTTTGAGAAAGAGATTTAACAGGGCAAGGCTAGGATTCTTCCTCCATAGTCCATTTCCTTCCTCTGAGATATACCGAACCCTTCCTGTTAGGGATGAACTTCTTAGAGCTCTTCTGAATTCTGACCTTATTGGATTTCATACTTTTGATTATGCAAGGCATTTCCTCTCTTGTTGCAGTAGAATGCTTGGGATTTCTTATCAATCCAAGCGAGGATACATTGGTCTTGAGTACTATGGAAGAACTGTGAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGTCAGATTCAATCAGTCATGAATCTTCCTGAGACAGAAACCAAGGTTGCAGAGTTACAAAGCCAGTTCAGAGGTCAAACTGTGATGCTTGGGGTGGATGACATGGATATCTTCAAAGGAATCAGCTTAAAACTCTTGGCCATGGAACAATTGCTTTTGCAACATGCTGATAAGAGGGGTAAAGTTGTTCTGATCCAAATTGCAAACCCTGCTAGAGGCCGGGGAAAGGATGTTCAGGAAGTGCAGAGTGAAACCTATGCCACAGTGAAAAGGATAAATGATACATTTGGAAGGCCTGGATACACACCTGTAGTCTTGATTGATACACCACTTCAAAGTTATGAGCGAATTGCTTATTATGTGATTGCAGAATGTTGTCTTGTTACAGCAGTGAGAGATGGGATGAACCTTATACCCTATGAGTATATCATATGTAGACAAGGAAGTGAGAAGATAGATGAGATTTTAGGGGAAAATCCATTTGCCCAAAAGAAAAGCATGCTGGTAGTGTCTGAGTTCATTGGGTGCTCCCCATCATTAAGTGGGGCAATTCGAGTAAATCCATGGAATATAGATGCTGTTGCTGAAGCTATGGATTCTGCCCTAATGGTCCCAGAGTCTGAAAAGCAAATGCGGCATGAGAAGCATTATAGGTATGTTAGTACACATGATGTTGCATATTGGGCGCGCAGCTTCTTGCAGGATCTGGAAAGGGCATGCAGAGATCATTTGAGAAGGAGATGCTGGGGAATTGGTTTTGGTTTAGGGTTTAGAGTAATTGCTTTGGATCCAAACTTTAGAAAGCTATCTGTGGAACATATTGTTTCAGCTTATAAGAGGACCAAGCACCGAGCAATTCTTTTGGATTATGATAGTACTATGGTACAGCCTGGATCAATTAGTACAACACCTAATGCTGAAGCTGTTTGCATCTTGAAAAGCTTGTGCAAGGACACCAAGAATTGTGTTTTCATTGTAAGTGGAAAGGAGAGAAAGACTCTTACTGAATGGTTTTCTTCTTGTGAAAGGCTAGGAATTGCTGCAGAGCATGGTTATTTTGTGAGGACAAATCATAATGAAGAATGGGAAGCTTGTGTTTCTGTGCCCGATTTTGACTGGAAACAGATTGCTGAGCCTGTTATGCAGTTATACACAGAGACAACTGATGGTTCTAACATAGAGACCAAAGAAAGTGCTCTTGTTTGGAACTACGAGTTTGCAGATCGAGATTTCGGCTCATGCCAGGCTAAGGAGCTTTTTGATCATCTGGAAAGTGTTCTTTCCAATGAGCCTGTTTCTGTTAAAAGTGGTCCAAACATTGTTGAAGTTAAACCTCAGGGTGTGACTAAAGGTATTGTAGCAGAACGTCTTCTGATAACAATGCAACAAAAGGGAGTGATTCCAGATTTTGTTCTATGCATTGGGGATGACAGATCAGATGAGGACATGTTTGGGGTAATAGCGGGTGCAAGGGCATCACTATCCCCTGTTGCAGAGGTGTTTCCTTGCACTGTTGGTCAGAAACCTAGCAAGGCAAAGTATTACTTGGAAGACACAAGCGAGATTTTGAGAATGTTACAAGGCCTTGCCAATGCTTCTGAGCATTCTGCTGCTAGAAGTTCTTCTCATTAA 2553 0.4164 MVSRSYSNLLELTSCDSPTFGREKKRLPRVATVAGVLSELDDETSNSVGSDAPSSISQERMIIVGNQLPLRANRKENGTWEFNWDEDSLLLQLKDGLGDDVETIYIGCLKEEIEPSEQDDVAQYLLDTFKCVPTFLPPELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGISYQSKRGYIGLEYYGRTVSIKILPVGIHIGQIQSVMNLPETETKVAELQSQFRGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHADKRGKVVLIQIANPARGRGKDVQEVQSETYATVKRINDTFGRPGYTPVVLIDTPLQSYERIAYYVIAECCLVTAVRDGMNLIPYEYIICRQGSEKIDEILGENPFAQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVPESEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDSTMVQPGSISTTPNAEAVCILKSLCKDTKNCVFIVSGKERKTLTEWFSSCERLGIAAEHGYFVRTNHNEEWEACVSVPDFDWKQIAEPVMQLYTETTDGSNIETKESALVWNYEFADRDFGSCQAKELFDHLESVLSNEPVSVKSGPNIVEVKPQGVTKGIVAERLLITMQQKGVIPDFVLCIGDDRSDEDMFGVIAGARASLSPVAEVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASEHSAARSSSH. 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08159 850 CDD HAD_TPP 592 828 - -
Seca7g08159 850 NCBIfam trehalose-phosphatase 589 837 IPR003337 GO:0003824|GO:0005992
Seca7g08159 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 548 - -
Seca7g08159 850 FunFam Trehalose-6-phosphate synthase 2 674 753 - -
Seca7g08159 850 Pfam Glycosyltransferase family 20 60 544 IPR001830 GO:0003824|GO:0005992
Seca7g08159 850 Gene3D Glycogen Phosphorylase B; 53 311 - -
Seca7g08159 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Seca7g08159 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 35 838 IPR001830 GO:0003824|GO:0005992
Seca7g08159 850 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 849 - -
Seca7g08159 850 Gene3D Glycogen Phosphorylase B; 312 528 - -
Seca7g08159 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 311 - -
Seca7g08159 850 SUPERFAMILY HAD-like 591 837 IPR036412 -
Seca7g08159 850 Gene3D - 590 703 IPR023214 -
Seca7g08159 850 Gene3D - 716 850 IPR023214 -
Seca7g08159 850 CDD GT20_TPS 60 544 IPR001830 GO:0003824|GO:0005992
Seca7g08159 850 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Seca7g08159 850 Pfam Trehalose-phosphatase 594 827 IPR003337 GO:0003824|GO:0005992
Seca7g08159 850 NCBIfam HAD-IIB family hydrolase 593 793 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08159 Seca-Chr7 186092586 186097553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08159 1 837 Trehalose Biosynthesis Gene Families AT4G17770 79.167 0.0 1419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08159 K16055 - gmx:100782799 1585.47