Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08154 ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTTCACTCAGTTTTCTACCAAGATAAACAGGATGATGGCATAATTGATCTGGGTCTTAGCCTTGGAACTGTTCAACATGAAGCTTATCATTCTTCTGGCAACTTTGAGAGAGATAGTCTAATGAAAATATGTTTGGATTCAGTGTATGTTGATGACCTTATGGGTTGGCCTCACTCTAATCTCAATCTGAAGAATTCAAGCACAATGCATTCTAGATCTGTCCATGAAAACTTTGATGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGATGGGCATATGTGAAGGTTAACATGGATGGGGTTACCATTGGTAGGAAAATTTGTGTTCTTGATCATGGAGGATACTCAAGTCTAGCAATCCAATTAGAAGACATGTTTGGAAGCCAATCTCTGTGTGGTTTACGATTGTTTCAATCAGGATCAGAGTATTCATTGTTGTACAAAGACAGAGAAGATAATTGGAAGGCTGTCGGTGATGTCCCATGGAAAGAGTTTGTGGAATGTGTGAAGCGGTTAAGGATTGCAAGAAAGAATGGAGGCTTTGTTTCCTGTTCATACACCCAAGACTAA 612 0.3938 MDSNTSSFLLNSSTFHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSGNFERDSLMKICLDSVYVDDLMGWPHSNLNLKNSSTMHSRSVHENFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLAIQLEDMFGSQSLCGLRLFQSGSEYSLLYKDREDNWKAVGDVPWKEFVECVKRLRIARKNGGFVSCSYTQD. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08154 203 Pfam AUX/IAA family 67 191 IPR033389 -
Seca7g08154 203 Gene3D - 99 198 - -
Seca7g08154 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 57 191 IPR003311 GO:0005634|GO:0006355
Seca7g08154 203 SUPERFAMILY CAD & PB1 domains 105 188 - -
Seca7g08154 203 ProSiteProfiles PB1 domain profile. 105 193 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08154 Seca-Chr7 186054146 186055818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08154 100 188 B3 DNA Binding Superfamily AT1G19220 37.079 1.00e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca7g08154 AUX_IAA 3.4e-24 CL0072