Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g08154 | ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTTCACTCAGTTTTCTACCAAGATAAACAGGATGATGGCATAATTGATCTGGGTCTTAGCCTTGGAACTGTTCAACATGAAGCTTATCATTCTTCTGGCAACTTTGAGAGAGATAGTCTAATGAAAATATGTTTGGATTCAGTGTATGTTGATGACCTTATGGGTTGGCCTCACTCTAATCTCAATCTGAAGAATTCAAGCACAATGCATTCTAGATCTGTCCATGAAAACTTTGATGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGATGGGCATATGTGAAGGTTAACATGGATGGGGTTACCATTGGTAGGAAAATTTGTGTTCTTGATCATGGAGGATACTCAAGTCTAGCAATCCAATTAGAAGACATGTTTGGAAGCCAATCTCTGTGTGGTTTACGATTGTTTCAATCAGGATCAGAGTATTCATTGTTGTACAAAGACAGAGAAGATAATTGGAAGGCTGTCGGTGATGTCCCATGGAAAGAGTTTGTGGAATGTGTGAAGCGGTTAAGGATTGCAAGAAAGAATGGAGGCTTTGTTTCCTGTTCATACACCCAAGACTAA | 612 | 0.3938 | MDSNTSSFLLNSSTFHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSGNFERDSLMKICLDSVYVDDLMGWPHSNLNLKNSSTMHSRSVHENFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLAIQLEDMFGSQSLCGLRLFQSGSEYSLLYKDREDNWKAVGDVPWKEFVECVKRLRIARKNGGFVSCSYTQD. | 204 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g08154 | 203 | Pfam | AUX/IAA family | 67 | 191 | IPR033389 | - | |
Seca7g08154 | 203 | Gene3D | - | 99 | 198 | - | - | |
Seca7g08154 | 203 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 57 | 191 | IPR003311 | GO:0005634|GO:0006355 | |
Seca7g08154 | 203 | SUPERFAMILY | CAD & PB1 domains | 105 | 188 | - | - | |
Seca7g08154 | 203 | ProSiteProfiles | PB1 domain profile. | 105 | 193 | IPR000270 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g08154 | Seca-Chr7 | 186054146 | 186055818 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g08154 | 100 | 188 | B3 DNA Binding Superfamily | AT1G19220 | 37.079 | 1.00e-09 | 55.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | AUX or IAA | Seca7g08154 | AUX_IAA | 3.4e-24 | CL0072 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g08154 | K14484 | - | gmx:100777024 | 328.946 |