LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g08149	ATGGAGGCGCAACCGCAACCTCCAACACCATCCACTGCCCCGCCACTATCCTCGGTGGCTCCGCCGCCACCACCACAACACCTCAACTATCCCGATTCCGTTGATTCCTCCCCACGCTCCCGCAACACTGACTCATGGGACGAGCCTTTCCCTCCTGCCTCCACCAAGCTCCGCCTCATGTGCAGTTACGGTGGCCACATCGTCCCTCGCCCTCACGACAAGTCTCTCTGCTATGTCGGTGGCGATACTCGCATCGTCGTGGTTGAACGCGCCACCTCCCTCTCTGACCTCTCCACGCGCCTCTCCAAAACCTTCCTCAATGGAAGACCCTTCACTCTCAAGTACCAGCTCCCAAACGAAGACCTCGATTCCCTCATCTCTGTTACCACCGATGAAGACCTTGAGAATATGATCGATGAGTACGATCGAACTACCTCAGCCAATTCATCCATCAAACCCTCACGTATTCGCCTCTTTCTCTTCCCTTCAAAACCCGATTCCACTCACTCCATTCCCCCTCAAATCCTCGATACCTCCGCTAAATCCGATGACTGGTTCCTCGATGCCCTAAACGGCGCCGGATTGCTCAACCGTGGCTTCTCTGATTCCGCCTCCGTTAACTGCTTATTAGGTCTCGATGATGACGTTGCAGGGAACAATATCGAGCAAGGTTCCAGGGAGGTTGTGGAGGGTGGTGCTTCTCAGCCTGGATCCTTTGGGAATTGCAAGAATTTGAAGCAGGATGTTCACTCTGTTCCCGATTCGCCTATGCTGGAGACCACTTCCTCTTTTGGTTCTACTTCGTCGTCGCCGTCGCTGGCCAATTTGCCGCCGATTCGGGTTCATGTGGAGGACGGTATGGGTGGCGGTGGTGGGGTTAGGGTGCAGCAGGATCAGAAGATGTTGGGGATTGAGGAACAGTTTGCTCAAATGGGCGTTGGTGTTGGACAGAAACAGCAGCAGGAGGAGGGCTTTGTTATGATGTCTTCGCCGCCTCCTCCTCCGGTGCCGTCCACCCTTTCCGCCACGGCGGTGGGTGTGCCGATCGGGTCTGCGGTGGTTGCCGGGGAATACCAGAACCGGGTTTACTCCGATGATGAGAGATCGGATCATGGGGTTCCTGTGGGATATAGAAAACCACCAACTCCTCAGCCACAGGCACAGCCTCAGGCACAAGCACAGTCACATCCTCCTCAATTTCAACAGAAGTCAAGTGGCGGCGCTGATTTGCCTTCCCCTGATTCAGTTTCAAGCAGTGATAGTAGTCTTTCAAATCCACTGTCACGTCCAAAACCTGTAATGTATCAAGATCAACTTCAGATTCAATCTGGAACCACAAGGGTTCCTAGTAACCCTGTGGATCCGAAACTTAATGTGTCTGATCCACACGGTCGGATCCAGGTGCAGCAACATGTACAGGACCCAGGATATTTATTGCAACAGCAATTTGAACACCAGCAACAGCCTCCTCCTCCTCCTCAACAGCAGCAGCAGTATATACATGGCACACATTTCATTCACCATAACCCTGGAATTCCTGCATATTATCCTGTATATCCTTCCCAGCAACAGCCCCATCCCCAGGTTTACTATGTCCCTGCAAGACAAGCCCAAGCTTACAACTTGTCTGTGCAGCAGTCTAATATGGGTGAATCTGCCACAGCAATCCCTTCTAGCCGCCCCCAAACTCCACCAAATCCTACTACATTAGTTCAACCATCTGCAGCTTACAACCCCATGAGAAATGCTCCCCTACCTAAAACTGAAATGACAGCAGCTGCTTACAGAACTGCAACTGCAGGAACCCCTCAATTGGTTCAAGTTCCTGCAAATCAGCATCAGCAACAATATGTCACTTACTCCCAGATCCACCATCCTTCTCAGTCCATAGCCCCTACTTCTGCTCCCCCTGCTAATTATGCTTATGATTATGTGGATCCTGCTCATGCTCAAATATACTACTCTCAACCTCTGGCACCCACAATGCCTTCACAGTACCAGACCATGACAGCTGCTGCTGTGGTGATGCCGGAAGTTTCTTCTGCTCAGCATCCCTCAGATGGCATGAAGCAGCAGATAAGAACCTCACAGCCATTATAA	2100	0.519	MEAQPQPPTPSTAPPLSSVAPPPPPQHLNYPDSVDSSPRSRNTDSWDEPFPPASTKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERATSLSDLSTRLSKTFLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTTSANSSIKPSRIRLFLFPSKPDSTHSIPPQILDTSAKSDDWFLDALNGAGLLNRGFSDSASVNCLLGLDDDVAGNNIEQGSREVVEGGASQPGSFGNCKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVEDGMGGGGGVRVQQDQKMLGIEEQFAQMGVGVGQKQQQEEGFVMMSSPPPPPVPSTLSATAVGVPIGSAVVAGEYQNRVYSDDERSDHGVPVGYRKPPTPQPQAQPQAQAQSHPPQFQQKSSGGADLPSPDSVSSSDSSLSNPLSRPKPVMYQDQLQIQSGTTRVPSNPVDPKLNVSDPHGRIQVQQHVQDPGYLLQQQFEHQQQPPPPPQQQQQYIHGTHFIHHNPGIPAYYPVYPSQQQPHPQVYYVPARQAQAYNLSVQQSNMGESATAIPSSRPQTPPNPTTLVQPSAAYNPMRNAPLPKTEMTAAAYRTATAGTPQLVQVPANQHQQQYVTYSQIHHPSQSIAPTSAPPANYAYDYVDPAHAQIYYSQPLAPTMPSQYQTMTAAAVVMPEVSSAQHPSDGMKQQIRTSQPL.	700

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g08149	699	MobiDBLite	consensus disorder prediction	254	275	-	-
	Seca7g08149	699	Pfam	PB1 domain	72	162	IPR000270	GO:0005515
	Seca7g08149	699	MobiDBLite	consensus disorder prediction	679	699	-	-
	Seca7g08149	699	MobiDBLite	consensus disorder prediction	362	434	-	-
	Seca7g08149	699	MobiDBLite	consensus disorder prediction	550	578	-	-
	Seca7g08149	699	MobiDBLite	consensus disorder prediction	1	29	-	-
	Seca7g08149	699	SUPERFAMILY	CAD & PB1 domains	72	171	-	-
	Seca7g08149	699	Gene3D	-	76	161	-	-
	Seca7g08149	699	MobiDBLite	consensus disorder prediction	30	49	-	-
	Seca7g08149	699	MobiDBLite	consensus disorder prediction	684	699	-	-
	Seca7g08149	699	MobiDBLite	consensus disorder prediction	388	434	-	-
	Seca7g08149	699	MobiDBLite	consensus disorder prediction	1	51	-	-
	Seca7g08149	699	PANTHER	OS05G0427100 PROTEIN-RELATED	29	522	-	-
	Seca7g08149	699	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	76	163	-	-
	Seca7g08149	699	ProSiteProfiles	PB1 domain profile.	56	163	IPR000270	GO:0005515
	Seca7g08149	699	SMART	PB1_new	71	163	IPR000270	GO:0005515
	Seca7g08149	699	CDD	PB1_UP2	60	161	-	-
	Seca7g08149	699	MobiDBLite	consensus disorder prediction	230	275	-	-
	Seca7g08149	699	MobiDBLite	consensus disorder prediction	442	461	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g08149	Seca-Chr7	186028964	186031223	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g08149	53	264	MAP Kinase Kinase Kinase	AT1G79570	32.889	8.44e-25	108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g08149	-		-	gmx:100775954	954.125