Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08143 ATGGAAGGTAAATCACAGTCAAAGCCATTGACCACTGATGTTCCTAGATTTGCACGAGGCTTAAGCATTCTGCTTATACATAATGATACACGGACTCTAGTGAACCTCAAAACACTGCTTGAGAAATACTCATTCAAAGTTACGGCTACATCTAACACACCAACAGCTGCATCCATGATTCTAGAGGATAAAGGAAGATTCAAAATGATCATGACTAAACTTAACATGCCTGGCGTGGATGCCGTTTCTTTTGTGCACTTAGTGCTTGGAAAACGCATTCCTGTGATATTCATGTACTCTGGAGGATTTGATGATGTGACGGATGAGAAAGCGTTAGCTTCAGAATCCTGTTACTTCATTGAGGAACCGATCATGTTATGCGATTTAAAATGTATATTGCAGGACATGTATCAATCGTCAAAATTGATCTATAAAGAATCTCAAGATATTACTGCAGAAGGATCACCACAGCCACAGGCACAGCATGCCAATGACACAGAGGTTGATGGAGAAATTAGAAACCATGGGAAGGGGAAGGGGAAAGTTGATCATAACAAGAAAATGGGAGGTGATTCGTTGGTAGGAGCCAGAGAAGGACTGCATAGAAGCCAAGGTGGTGGGAGAGTTTGTGAGCACTCAACATACCCAACCCGACCACCTTCATGGTTATGGAAGCATTCAGTACCTCAGATGAACTTGTTCAGTCAAAATTTTCGTGACAGTTTATTTGGTGATAAAAAACGTCTTTGGACACCTGAGTTGCATCTCAAGTTTGAAGAAGCCGTGCGTCACTTAGGAGAGAACGCTCGTCCCAAAGCCATATTATATATGATGAATGACGCTTCCCTCACAATCCGTCAGGTTGCTAGCCACTACCAGAAATACAAAAGTCGGATGAAGCATACGGAAAATGACAGCAGGAAATCTGATTCGGGTGCAGTGAAGACCTCATCATGCTCAAGTGTCAAGGCAAAGTTTCGCTCACCACCTGAAGGGTCCAGCACAGGATCAGCACAAGGGGTGTCGCTCCCAGCAGCAGCAGAGTCAGAGATTGTGAACGCAGCAGGGAATCCAGGTGAAGTAGTGAGCAACGGTGGAGACAGTGAATGGACGACAGTAACAGTAGTGAGAAAAGAAGAACAACCTGCAAATGATGATGATGAGTTGGAACGGCTTCGTGTGATAAAAATGCTTGGCGAAGTAGACTCTGAGACTTTTGGTGATTGGTTTGAAAATGGAATTATTCCTCCTCCATATGAAATGGATGAATACACTGCCAACCTCAAGAATGTTCTTGACAGCCTCACTCCTCCAGACTTTTGA 1323 0.4369 MEGKSQSKPLTTDVPRFARGLSILLIHNDTRTLVNLKTLLEKYSFKVTATSNTPTAASMILEDKGRFKMIMTKLNMPGVDAVSFVHLVLGKRIPVIFMYSGGFDDVTDEKALASESCYFIEEPIMLCDLKCILQDMYQSSKLIYKESQDITAEGSPQPQAQHANDTEVDGEIRNHGKGKGKVDHNKKMGGDSLVGAREGLHRSQGGGRVCEHSTYPTRPPSWLWKHSVPQMNLFSQNFRDSLFGDKKRLWTPELHLKFEEAVRHLGENARPKAILYMMNDASLTIRQVASHYQKYKSRMKHTENDSRKSDSGAVKTSSCSSVKAKFRSPPEGSSTGSAQGVSLPAAAESEIVNAAGNPGEVVSNGGDSEWTTVTVVRKEEQPANDDDELERLRVIKMLGEVDSETFGDWFENGIIPPPYEMDEYTANLKNVLDSLTPPDF. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08143 440 MobiDBLite consensus disorder prediction 311 342 - -
Seca7g08143 440 Gene3D - 21 154 - -
Seca7g08143 440 MobiDBLite consensus disorder prediction 295 342 - -
Seca7g08143 440 MobiDBLite consensus disorder prediction 166 188 - -
Seca7g08143 440 MobiDBLite consensus disorder prediction 148 188 - -
Seca7g08143 440 Pfam Myb-like DNA-binding domain 249 296 IPR001005 -
Seca7g08143 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 246 300 IPR017930 -
Seca7g08143 440 Gene3D - 245 302 - -
Seca7g08143 440 PANTHER - 4 308 - -
Seca7g08143 440 MobiDBLite consensus disorder prediction 296 310 - -
Seca7g08143 440 MobiDBLite consensus disorder prediction 148 164 - -
Seca7g08143 440 NCBIfam myb-like DNA-binding domain, SHAQKYF class 246 298 IPR006447 GO:0003677
Seca7g08143 440 SUPERFAMILY Homeodomain-like 246 301 IPR009057 -
Seca7g08143 440 FunFam Two-component response regulator 244 303 - -
Seca7g08143 440 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Seca7g08143 440 SUPERFAMILY CheY-like 19 141 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08143 Seca-Chr7 185935872 185938646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08143 14 310 Response Regulator Gene Family AT1G68210 28.662 9.05e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca7g08143 Myb_DNA-binding 4.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08143 - - vun:114191433 185.652