LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g08143	ATGGAAGGTAAATCACAGTCAAAGCCATTGACCACTGATGTTCCTAGATTTGCACGAGGCTTAAGCATTCTGCTTATACATAATGATACACGGACTCTAGTGAACCTCAAAACACTGCTTGAGAAATACTCATTCAAAGTTACGGCTACATCTAACACACCAACAGCTGCATCCATGATTCTAGAGGATAAAGGAAGATTCAAAATGATCATGACTAAACTTAACATGCCTGGCGTGGATGCCGTTTCTTTTGTGCACTTAGTGCTTGGAAAACGCATTCCTGTGATATTCATGTACTCTGGAGGATTTGATGATGTGACGGATGAGAAAGCGTTAGCTTCAGAATCCTGTTACTTCATTGAGGAACCGATCATGTTATGCGATTTAAAATGTATATTGCAGGACATGTATCAATCGTCAAAATTGATCTATAAAGAATCTCAAGATATTACTGCAGAAGGATCACCACAGCCACAGGCACAGCATGCCAATGACACAGAGGTTGATGGAGAAATTAGAAACCATGGGAAGGGGAAGGGGAAAGTTGATCATAACAAGAAAATGGGAGGTGATTCGTTGGTAGGAGCCAGAGAAGGACTGCATAGAAGCCAAGGTGGTGGGAGAGTTTGTGAGCACTCAACATACCCAACCCGACCACCTTCATGGTTATGGAAGCATTCAGTACCTCAGATGAACTTGTTCAGTCAAAATTTTCGTGACAGTTTATTTGGTGATAAAAAACGTCTTTGGACACCTGAGTTGCATCTCAAGTTTGAAGAAGCCGTGCGTCACTTAGGAGAGAACGCTCGTCCCAAAGCCATATTATATATGATGAATGACGCTTCCCTCACAATCCGTCAGGTTGCTAGCCACTACCAGAAATACAAAAGTCGGATGAAGCATACGGAAAATGACAGCAGGAAATCTGATTCGGGTGCAGTGAAGACCTCATCATGCTCAAGTGTCAAGGCAAAGTTTCGCTCACCACCTGAAGGGTCCAGCACAGGATCAGCACAAGGGGTGTCGCTCCCAGCAGCAGCAGAGTCAGAGATTGTGAACGCAGCAGGGAATCCAGGTGAAGTAGTGAGCAACGGTGGAGACAGTGAATGGACGACAGTAACAGTAGTGAGAAAAGAAGAACAACCTGCAAATGATGATGATGAGTTGGAACGGCTTCGTGTGATAAAAATGCTTGGCGAAGTAGACTCTGAGACTTTTGGTGATTGGTTTGAAAATGGAATTATTCCTCCTCCATATGAAATGGATGAATACACTGCCAACCTCAAGAATGTTCTTGACAGCCTCACTCCTCCAGACTTTTGA	1323	0.4369	MEGKSQSKPLTTDVPRFARGLSILLIHNDTRTLVNLKTLLEKYSFKVTATSNTPTAASMILEDKGRFKMIMTKLNMPGVDAVSFVHLVLGKRIPVIFMYSGGFDDVTDEKALASESCYFIEEPIMLCDLKCILQDMYQSSKLIYKESQDITAEGSPQPQAQHANDTEVDGEIRNHGKGKGKVDHNKKMGGDSLVGAREGLHRSQGGGRVCEHSTYPTRPPSWLWKHSVPQMNLFSQNFRDSLFGDKKRLWTPELHLKFEEAVRHLGENARPKAILYMMNDASLTIRQVASHYQKYKSRMKHTENDSRKSDSGAVKTSSCSSVKAKFRSPPEGSSTGSAQGVSLPAAAESEIVNAAGNPGEVVSNGGDSEWTTVTVVRKEEQPANDDDELERLRVIKMLGEVDSETFGDWFENGIIPPPYEMDEYTANLKNVLDSLTPPDF.	441

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca7g08143	440	MobiDBLite	consensus disorder prediction	311	342	-	-
Seca7g08143	440	Gene3D	-	21	154	-	-
Seca7g08143	440	MobiDBLite	consensus disorder prediction	295	342	-	-
Seca7g08143	440	MobiDBLite	consensus disorder prediction	166	188	-	-
Seca7g08143	440	MobiDBLite	consensus disorder prediction	148	188	-	-
Seca7g08143	440	Pfam	Myb-like DNA-binding domain	249	296	IPR001005	-
Seca7g08143	440	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	246	300	IPR017930	-
Seca7g08143	440	Gene3D	-	245	302	-	-
Seca7g08143	440	PANTHER	-	4	308	-	-
Seca7g08143	440	MobiDBLite	consensus disorder prediction	296	310	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g08143	Seca-Chr7	185935872	185938646	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g08143	14	310	Response Regulator Gene Family	AT1G68210	28.662	9.05e-26	108

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Seca7g08143		Myb_DNA-binding	4.1e-09	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g08143	-		-	vun:114191433	185.652

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