Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g08140 | ATGCTTAACAAGGATGCTTGCTCTCCCTCCTCCAACAGCGGTTTTGGCGCCAACACCGCCGGTCAAATGCAGTCCAGTGGTGGCTCCTTTGGTTCCTTCTACTCCGCTTTGTCGAATGATAATCTCTCTGGAAACTGCAGCAACGGCAGCGGCGTCTCGCTTTACCCCTACTCTGACTCGGCAACTCAGTACGACTCGTGCGTCATACAGAAACACCAGGATATGGTGAATCGGCACAGCATGTGCCTCACTCGCCTCGTGGAAACTTCCAAAGAGGTGGAAGCTCTGCGGCAAGAGAATAGCCAACTCCGTGCTATGAACAAGGACCTGCAGAAGCAGTTGAATCTCGTCGTCCAGGCTTCGCTGGAGAATCGATTCGGCGGCGGTTCCTCCGGCCAGAATCAGACGACACCGTTTGACATCTTGCATGGGTTCCGTAGCTTCCACATTGGGGATGGGAAAGAGAACTGCGCTGATTGGAATAACAACAATATTATTAAAAATAATAATAATAATAATGAGCTGCAGGAAGGTTCGGACGAGAGTCCAACCAGCGTGATTGAGAATAACGGTGTTGAAGTGGAGAGATTCGCGCTGCCCAAAAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCAAACGTTGCCACCAATAATGCTTGTCGCACCAAGGGTGCTACTCGCCCACGCACGTCCTCCACTCCACCTGATGCCGTTCAAAAGGTATATGTTCGAGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGGTAGTGTATAACCAAGGGATGTTCAAGACTGAGTTGTGTAACAAATGGCAGGAGACGGGCACTTGCCCATATGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGTTGCGCCCAGTCATCCGCCACCCACGCTATAAAACAGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTATGCCCATATGGCCACAGATGTCATTTCCGCCATGCACTTACTGAACAAGAGAAAGCTATGTCACAACCTAAACCCAGAACAACCAAGCTGGAAAGATAA | 1056 | 0.5066 | MLNKDACSPSSNSGFGANTAGQMQSSGGSFGSFYSALSNDNLSGNCSNGSGVSLYPYSDSATQYDSCVIQKHQDMVNRHSMCLTRLVETSKEVEALRQENSQLRAMNKDLQKQLNLVVQASLENRFGGGSSGQNQTTPFDILHGFRSFHIGDGKENCADWNNNNIIKNNNNNNELQEGSDESPTSVIENNGVEVERFALPKSISVRSNGYLKMAQSANVATNNACRTKGATRPRTSSTPPDAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAMSQPKPRTTKLER. | 352 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g08140 | 351 | SMART | c3hfinal6 | 267 | 294 | IPR000571 | GO:0046872 | |
Seca7g08140 | 351 | SMART | c3hfinal6 | 305 | 332 | IPR000571 | GO:0046872 | |
Seca7g08140 | 351 | FunFam | Zinc finger protein 36, C3H1 type-like 1 | 301 | 337 | - | - | |
Seca7g08140 | 351 | Gene3D | - | 301 | 337 | - | - | |
Seca7g08140 | 351 | Gene3D | - | 262 | 300 | - | - | |
Seca7g08140 | 351 | FunFam | zinc finger CCCH domain-containing protein 15-like | 261 | 300 | - | - | |
Seca7g08140 | 351 | SUPERFAMILY | CCCH zinc finger | 264 | 299 | IPR036855 | GO:0046872 | |
Seca7g08140 | 351 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 72 | 341 | IPR045877 | GO:0003729 | |
Seca7g08140 | 351 | SUPERFAMILY | CCCH zinc finger | 301 | 335 | IPR036855 | GO:0046872 | |
Seca7g08140 | 351 | Coils | Coil | 86 | 116 | - | - | |
Seca7g08140 | 351 | ProSiteProfiles | Zinc finger C3H1-type profile. | 305 | 333 | IPR000571 | GO:0046872 | |
Seca7g08140 | 351 | ProSiteProfiles | Zinc finger C3H1-type profile. | 267 | 295 | IPR000571 | GO:0046872 | |
Seca7g08140 | 351 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 268 | 293 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g08140 | Seca-Chr7 | 185906520 | 185909473 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g08140 | 57 | 340 | C3H Transcription Factor Family | AT1G68200 | 51.736 | 3.30e-88 | 266 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Seca7g08140 | zf-CCCH | 2.8e-12 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g08140 | K18753 | - | gmx:100819250 | 514.998 |