Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08140 ATGCTTAACAAGGATGCTTGCTCTCCCTCCTCCAACAGCGGTTTTGGCGCCAACACCGCCGGTCAAATGCAGTCCAGTGGTGGCTCCTTTGGTTCCTTCTACTCCGCTTTGTCGAATGATAATCTCTCTGGAAACTGCAGCAACGGCAGCGGCGTCTCGCTTTACCCCTACTCTGACTCGGCAACTCAGTACGACTCGTGCGTCATACAGAAACACCAGGATATGGTGAATCGGCACAGCATGTGCCTCACTCGCCTCGTGGAAACTTCCAAAGAGGTGGAAGCTCTGCGGCAAGAGAATAGCCAACTCCGTGCTATGAACAAGGACCTGCAGAAGCAGTTGAATCTCGTCGTCCAGGCTTCGCTGGAGAATCGATTCGGCGGCGGTTCCTCCGGCCAGAATCAGACGACACCGTTTGACATCTTGCATGGGTTCCGTAGCTTCCACATTGGGGATGGGAAAGAGAACTGCGCTGATTGGAATAACAACAATATTATTAAAAATAATAATAATAATAATGAGCTGCAGGAAGGTTCGGACGAGAGTCCAACCAGCGTGATTGAGAATAACGGTGTTGAAGTGGAGAGATTCGCGCTGCCCAAAAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCAAACGTTGCCACCAATAATGCTTGTCGCACCAAGGGTGCTACTCGCCCACGCACGTCCTCCACTCCACCTGATGCCGTTCAAAAGGTATATGTTCGAGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGGTAGTGTATAACCAAGGGATGTTCAAGACTGAGTTGTGTAACAAATGGCAGGAGACGGGCACTTGCCCATATGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGTTGCGCCCAGTCATCCGCCACCCACGCTATAAAACAGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTATGCCCATATGGCCACAGATGTCATTTCCGCCATGCACTTACTGAACAAGAGAAAGCTATGTCACAACCTAAACCCAGAACAACCAAGCTGGAAAGATAA 1056 0.5066 MLNKDACSPSSNSGFGANTAGQMQSSGGSFGSFYSALSNDNLSGNCSNGSGVSLYPYSDSATQYDSCVIQKHQDMVNRHSMCLTRLVETSKEVEALRQENSQLRAMNKDLQKQLNLVVQASLENRFGGGSSGQNQTTPFDILHGFRSFHIGDGKENCADWNNNNIIKNNNNNNELQEGSDESPTSVIENNGVEVERFALPKSISVRSNGYLKMAQSANVATNNACRTKGATRPRTSSTPPDAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAMSQPKPRTTKLER. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08140 351 SMART c3hfinal6 267 294 IPR000571 GO:0046872
Seca7g08140 351 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Seca7g08140 351 FunFam Zinc finger protein 36, C3H1 type-like 1 301 337 - -
Seca7g08140 351 Gene3D - 301 337 - -
Seca7g08140 351 Gene3D - 262 300 - -
Seca7g08140 351 FunFam zinc finger CCCH domain-containing protein 15-like 261 300 - -
Seca7g08140 351 SUPERFAMILY CCCH zinc finger 264 299 IPR036855 GO:0046872
Seca7g08140 351 PANTHER CCCH ZINC FINGER/TIS11-RELATED 72 341 IPR045877 GO:0003729
Seca7g08140 351 SUPERFAMILY CCCH zinc finger 301 335 IPR036855 GO:0046872
Seca7g08140 351 Coils Coil 86 116 - -
Seca7g08140 351 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Seca7g08140 351 ProSiteProfiles Zinc finger C3H1-type profile. 267 295 IPR000571 GO:0046872
Seca7g08140 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 293 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08140 Seca-Chr7 185906520 185909473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08140 57 340 C3H Transcription Factor Family AT1G68200 51.736 3.30e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca7g08140 zf-CCCH 2.8e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08140 K18753 - gmx:100819250 514.998