Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08136 ATGGGTTTGCAAAACCAGTTAAACGACGTGTCGTCGGATTCGATTCCGCTGCTCGTCTTGGCGCAAATCGCCACCTGCGTCAGCTACCTTCGCTCCATGCTCCTCGCTCTCCTCCAATCACTCGGTCTCTGCAGGTTCTACACCGACCAGATCGTTGACGACAGCTTCTTCGCCGCCGTTGGATCCGGCCTCGCCGGAATCATCATGCTCTCCGATCAGCTCACCCTCAACAACAAATTCTTCTACGAGAAAGGCGCCACCGATGACGACCAGGACTGCGTTGTGTGCAAAACCACCTTCAAGGACGGAGACCACGTTCGGATGCTTCCTTGCCGCCATGTCTACCACCGCCGATGCTTCGACGGATGGCTCCACCAGTACAAGTTCAACTGTCCCATCTGCCGCTACAATCTCATCTCTGACGAGCGCGTGGCTCTCACGGAGCGCCGTGTCGGTAGCCAACTCATCTCCTGGTTTTCCCTGCGCTGA 489 0.5685 MGLQNQLNDVSSDSIPLLVLAQIATCVSYLRSMLLALLQSLGLCRFYTDQIVDDSFFAAVGSGLAGIIMLSDQLTLNNKFFYEKGATDDDQDCVVCKTTFKDGDHVRMLPCRHVYHRRCFDGWLHQYKFNCPICRYNLISDERVALTERRVGSQLISWFSLR. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08136 162 CDD RING-H2_RNF103 87 141 - -
Seca7g08136 162 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Seca7g08136 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 150 IPR013083 -
Seca7g08136 162 SMART ring_2 93 134 IPR001841 -
Seca7g08136 162 SUPERFAMILY RING/U-box 79 141 - -
Seca7g08136 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 81 146 - -
Seca7g08136 162 Pfam Ring finger domain 92 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08136 Seca-Chr7 185850100 185850588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08136 1 161 C3H Transcription Factor Family AT1G15100 49.383 2.01e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08136 K16282 - gmx:100797628 246.514