Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08095 ATGGGAGATCACTTTAATTTGCTGGTTGATCGATTGATTACTGAATCCACATTAGAAGCTGCAATTGAAAGCAGAAAGAGGTCAATGCAGGCTGCATCCTCAGCAGTGAATGATACAGAAGTTAACCCCTCTTTGATGAAGGTGGGTGTGGATGATATCAAATGTCCAGGGAAACTGGTAGAATGCAGGATATGTCATGACGATGATGAAGATTCAAATATGGAGACACCCTGCTCCTGTTGTGGCAGTTTGAAGTATGCCCACCGCAAATGTATACAACGATGGTGTAATGAGAAAGGTGACACCACCTGTGAGATATGCCACCAGCAATTCAAGCCTGGTTATACAGCTCCTCCTCCACTATTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGAAACTGGGAGATTTCAAGAAGAGACCTAAACAGTACTCATTTGGTTAGCATGGTTCCCACCGACCAGAACCTTACCAATTCTAACTATGATCAATATTCAGCCTCTACTTCAGGAAGTTTCATATGCTGTCGTTCAGTTGCTATCATTGTAATCTCTCTCATATCTTAA 567 0.4233 MGDHFNLLVDRLITESTLEAAIESRKRSMQAASSAVNDTEVNPSLMKVGVDDIKCPGKLVECRICHDDDEDSNMETPCSCCGSLKYAHRKCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLTNSNYDQYSASTSGSFICCRSVAIIVISLIS. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08095 188 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Seca7g08095 188 CDD RING_CH-C4HC3_MARCH 62 108 - -
Seca7g08095 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 117 IPR013083 -
Seca7g08095 188 SUPERFAMILY RING/U-box 60 112 - -
Seca7g08095 188 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 186 IPR033275 -
Seca7g08095 188 FunFam Zinc finger family protein 50 117 - -
Seca7g08095 188 SMART ringv_2 61 108 IPR011016 GO:0008270
Seca7g08095 188 Pfam Protein of unknown function (DUF3675) 113 186 IPR022143 -
Seca7g08095 188 ProSiteProfiles Zinc finger RING-type profile. 62 108 IPR001841 -
Seca7g08095 188 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08095 Seca-Chr7 185441846 185445960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08095 51 108 C3H Transcription Factor Family AT2G37950 45.902 3.30e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08095 - - vun:114190540 349.747