Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08083 ATGCTAGGTTCATTGCCTATACTGCCTCTCCCTGCTCCTCCGTCTGATGGAAATCTTGGTCCTCTCCCTGAGTCTCAAGTGCCTAATGAGGAGAGGGATGAGAAAACATCCAATGAAGAGCAGAACAAAGTAAATTCAGCTTCTGCTCCAGCAACAGTTGCCACACACACTAGAACTATTGGAATTATTCATCCCCCTCCTGACATTAGAACCATAGTTGATAAAACTTCCCAGTTTGTGGCTAAAAATGGTCCAGAATTTGAAAAGAGGATTATTGCAAATAACACAGGCAATGCCAAATTTAATTTCCTGAACCCATCGGATCCTTATCATGCATATTATCAACACCGGTTGACTGAATTTCGCGCTCAGAATCAATCTTCTGCTCTGCAACCTCCTTCGCAACCTGAAGACTCAGCTGCTCCTGAATCAGCCCCATCTGCACTAGCCCCTGATAGTAATGGTGCAGCAGCAGCAGCAGCAGCAGAAAAGCCTGATGTTTCTGCTCAGTTTAAACCAGTAAGGAAAGTACTTGAGCCCCCAGAGGCTGAGCAGTATACAGTAAGGCTTCCTGAAGGAATTACAGGGGAAGAGCTGGATATTATAAAGCTTACAGCACAGTTTGTGGCTCGAAATGGGAAATCTTTTTTGACAGGATTGACAAGTAGGGAAGTTAATAACCCTCAATTCCATTTCTTGAAACCAACCCACAGTATGTTTACGTTTTTTACTTCTCTTGCGGATGCATATTCAAAGGTTTTGATGCCTCCAAAGGGTTTGACGGAGAAGCTGAGGAAGAGTGTCTCTGACATGACTACAGTCCTTGAAAGGTGTGTGAATAGGCTTGAATGGGAGCGTTCGCAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAGCAGGAAAGAATACAGATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAAACAATAGATTTTGCTGATGATGAGGATGAAGAATTACCTCCTCCAATGACTATTGAGGAGGTGATAAGGAGAAGCAAGGTGTCAGCCATGGAAGAAGATATTGTTGAGCCTGGAAAGGAAGTAGAAATGGAAATGGATGAAGAAGAGGCCCAGCTTGTTGAAGAGGGCATGAGAGCTGCTAGTTTGGAAGACAATGATGACGTGAAGAAGAACGAAGTCAGGGTTACTGAAGACCCTGAACCGCCAATGAGGATTGTGAAGAACTGGAAGAGACCAGAGGAGAGGGTTCCCACAGAAAGAGATTCAACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTAATTCCTATTAGTGAAATGTCAGAACATATGCGAATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGAGAAACAACTCTGGCTCAGGATGATGAAATCTCAAGAAACATCGTTGGACTTGCTCGGACCCGTCCTGATATCTTTGGTACTACAGAGGAAGAGGTTTCCAATGCTGTCAAGGCAGAGATAGAGAAGAAAAATGATGAGCAACCAAAGCAGGTTATATGGGATGGTCACACTGGTAGTATTGGCCGTACTGCAAACCAAGCCATGTCACAGAATATTGGTAGTGAGGATCAAAATGATGCTTCTAATAATGAAGCCAAGAACCTTCCTGGTCCTGCTGCACCTCCTCCAAGACCTGGCATGCCTTCAGTTCGTCCTCTTCCGCCACCACCTGGACTAGCATTGAATCTTCCTCGTGTTCCTGTCAATGCTGTTCAGTATTCTGCACCTAACAGTGGTGGCCTTCCGATTCCTCCACCAAGGCCACCCGTCATGCCTATGATGCCATCTGTCCGGCCAGTCCCCCCTCCTCCAATGCCAATGACTTCTGGACAGCAGTCAATCATGGCTGGTCAACCACCCCCAATGCACCCATCAATTCCTATGAATAGCCAAGGAATTCACATACCTCCACCACCTGGATCTCAGTTCACCCCTGTTCCAGTTCCACGACCTTTTATGCCTCTTCCACCATCAGTGATGCCTATGATGCATCCACCACCTTTGCCACAAGGAGTACTGCCGCCACCACCACCACCTGAGGAAGCTCCTCCCCCACTTCCAGATGAACCAGAACCAAAGAAGCAGAAGCTTGATGATTCTGCTCTGATCCCTGAAGATCAATTTCTGGCTCAGCATCCGGGACCTGTTCGCATCAGTATATCTGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACAGTGCAATCTCTGTCTGAAACTGTTGGCAGTCTGAAGGAAAAAATTGCTGGGGAGATCCAGCTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTCAAGGATAATATTTCACTTGCTCATTACAACATTAGTGGAGGAGAAACACTTTCCCTAACCTTAAGAGAGCGTGGTGGTAGAAAGAGATGA 2457 0.4554 MLGSLPILPLPAPPSDGNLGPLPESQVPNEERDEKTSNEEQNKVNSASAPATVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIIANNTGNAKFNFLNPSDPYHAYYQHRLTEFRAQNQSSALQPPSQPEDSAAPESAPSALAPDSNGAAAAAAAEKPDVSAQFKPVRKVLEPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLRKSVSDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFADDEDEELPPPMTIEEVIRRSKVSAMEEDIVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDDVKKNEVRVTEDPEPPMRIVKNWKRPEERVPTERDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTANQAMSQNIGSEDQNDASNNEAKNLPGPAAPPPRPGMPSVRPLPPPPGLALNLPRVPVNAVQYSAPNSGGLPIPPPRPPVMPMMPSVRPVPPPPMPMTSGQQSIMAGQPPPMHPSIPMNSQGIHIPPPPGSQFTPVPVPRPFMPLPPSVMPMMHPPPLPQGVLPPPPPPEEAPPPLPDEPEPKKQKLDDSALIPEDQFLAQHPGPVRISISVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNISLAHYNISGGETLSLTLRERGGRKR. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08083 818 FunFam Splicing factor 3A subunit 1 56 127 - -
Seca7g08083 818 MobiDBLite consensus disorder prediction 41 55 - -
Seca7g08083 818 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 49 768 IPR045146 GO:0003723|GO:0045292
Seca7g08083 818 Pfam Surp module 199 250 IPR000061 GO:0003723|GO:0006396
Seca7g08083 818 Pfam Surp module 70 121 IPR000061 GO:0003723|GO:0006396
Seca7g08083 818 ProSiteProfiles SURP motif repeat profile. 201 243 IPR000061 GO:0003723|GO:0006396
Seca7g08083 818 SUPERFAMILY Ubiquitin-like 710 816 IPR029071 -
Seca7g08083 818 MobiDBLite consensus disorder prediction 124 155 - -
Seca7g08083 818 ProSiteProfiles SURP motif repeat profile. 72 114 IPR000061 GO:0003723|GO:0006396
Seca7g08083 818 SUPERFAMILY Surp module (SWAP domain) 50 122 IPR035967 GO:0003723|GO:0006396
Seca7g08083 818 MobiDBLite consensus disorder prediction 552 567 - -
Seca7g08083 818 FunFam Splicing factor 3a, subunit 1 194 252 - -
Seca7g08083 818 Coils Coil 285 305 - -
Seca7g08083 818 MobiDBLite consensus disorder prediction 124 141 - -
Seca7g08083 818 Gene3D Surp module 194 252 IPR035967 GO:0003723|GO:0006396
Seca7g08083 818 MobiDBLite consensus disorder prediction 1 62 - -
Seca7g08083 818 MobiDBLite consensus disorder prediction 702 717 - -
Seca7g08083 818 Gene3D - 707 817 - -
Seca7g08083 818 ProSiteProfiles Ubiquitin domain profile. 759 815 IPR000626 GO:0005515
Seca7g08083 818 Coils Coil 363 383 - -
Seca7g08083 818 CDD Ubl_SF3a120 731 811 IPR035563 -
Seca7g08083 818 MobiDBLite consensus disorder prediction 679 721 - -
Seca7g08083 818 MobiDBLite consensus disorder prediction 536 567 - -
Seca7g08083 818 MobiDBLite consensus disorder prediction 679 701 - -
Seca7g08083 818 Pfam Pre-mRNA splicing factor PRP21 like protein 268 482 IPR022030 -
Seca7g08083 818 SMART surpneu2 199 252 IPR000061 GO:0003723|GO:0006396
Seca7g08083 818 SMART surpneu2 70 123 IPR000061 GO:0003723|GO:0006396
Seca7g08083 818 Gene3D Surp module 56 129 IPR035967 GO:0003723|GO:0006396
Seca7g08083 818 SUPERFAMILY Surp module (SWAP domain) 177 251 IPR035967 GO:0003723|GO:0006396
Seca7g08083 818 SMART ubq_7 739 811 IPR000626 GO:0005515
Seca7g08083 818 Pfam Ubiquitin family 746 813 IPR000626 GO:0005515
Seca7g08083 818 FunFam Probable splicing factor 3A subunit 1 707 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08083 Seca-Chr7 185311759 185316720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08083 746 815 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.571 3.47e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08083 K12825 - gmx:100797261 1211.82