Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08073 ATGGATCCAGTATCTGCTGATGTGTCTAATTCACCACCTGTTAAAGTTCCATCTACTTCACCTCCTGCTAAAGAGGCTGATGGACAAGCTTCAGCTGCTGTTGCCTCTGGACAAGATAATTCTGCCCCTGAGGCACCATCTAGGCTAAATTCCACTGGCATATCATCTTGGGCCAAAAATTTGAAAATTTCTCAATCATTTTCTGGCTCCCAAGATGACTCACCAAGTGGAAATGTTGGGAAATCAGCTTTTGCACGCCTCACTAGTAATTTGGGATTGCGGTTGTCTCCAAAATCTCCTGTGGCAGATGACAGTTCCAATGAAACAACAGCACAATCTAATTTGTTTGGAAGTATTACAAAAGGCCTGGTTGACTCTTCTAAGAATGCTGTAAAAGCTGTACAGGTTAAAGCGCGGCATGTTGTTTCTCAGAATAAACGCAGATACCAGGTGGAAGGAGGTTTTGATTTAGATATGACATATATCACAGAAAACATTATTGCAATGGGGTTTCCTGCTGGTGACATGAGCTCTGGCTTTTTTGGTTATGTCGAAGGATTTTACCGAAATCACATGGAAGAAGTGATTAAGTTTTTTGAGACTCACCATAAGGGTAAATACAAAGTATATAATCTCTGTTCTGAGAGGCTGTATGACGCATCATTGTTTGAGGGGAAGGTTGCTAGCTTCCCATTTGATGACCATAATTGCCCACCAATTCAACTGATTACATCATTTTGTCAAAGTGCATACTCATGGTTGAAAGAAGATATTGAAAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCGAGGACAGGGTTGATGATTTCTAGTCTTCTATTATTCTTAAAGTTCTTCCCAACTGCTGAGGAGTCAATGGATTACTATAATCAAAAAAGATGTATTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGGGTGTTGACATACTTTAATGGCGAAATCCCACCTGCCCGCAGGTGCATGCTTAGGGGATTCAGGCTTCACAGATGCCCTTACTGGATCAGGCCCTCTATAACTGTCTCTGATCATAGAGGTGTGCTGTTCTTGGACTAA 1104 0.4139 MDPVSADVSNSPPVKVPSTSPPAKEADGQASAAVASGQDNSAPEAPSRLNSTGISSWAKNLKISQSFSGSQDDSPSGNVGKSAFARLTSNLGLRLSPKSPVADDSSNETTAQSNLFGSITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQVEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLITSFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKYFERVLTYFNGEIPPARRCMLRGFRLHRCPYWIRPSITVSDHRGVLFLD. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08073 367 CDD PTP_PTEN 158 322 IPR045101 GO:0016791
Seca7g08073 367 Gene3D Protein tyrosine phosphatase superfamily 132 330 IPR029021 -
Seca7g08073 367 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 124 364 - -
Seca7g08073 367 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 262 301 IPR000387 GO:0016311|GO:0016791
Seca7g08073 367 MobiDBLite consensus disorder prediction 1 53 - -
Seca7g08073 367 MobiDBLite consensus disorder prediction 33 53 - -
Seca7g08073 367 ProSiteProfiles Phosphatase tensin-type domain profile. 148 327 IPR029023 -
Seca7g08073 367 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 132 330 - -
Seca7g08073 367 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 161 329 IPR029021 -
Seca7g08073 367 ProSitePatterns Tyrosine specific protein phosphatases active site. 264 274 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08073 Seca-Chr7 185211122 185215513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08073 33 365 Protein tyrosine phosphatase (PTP) family AT3G19420 79.464 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08073 K01110 - gmx:100784003 661.373