Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08029 ATGACTAGTGCAACTGGAAAATCGACGAGCCTTAACAACAGTACCACTGAGCAGATGGGAACGGAGCAATGTGAGTTGTCTGAAAAGACACATCAGATAGGTTCTGAATGTTTAGACAGCGAACAAAGGGTGCTTGGTACTGTGCTAACTAGTTCTGCTATCGATGCAAAATCAACTCAAGTTTCTGCCAATAATACCGAGAATTCTGTTATCCAACTACCTGCGCCACCCCAACATTGCTCAGAAGAAGGTTGTCAGGTTGTAGAAGGTTCATGCCTTCAACAAAGTACCTTTGAACAAGTCCCTGTTCATTTATCTAATGATAAATCAGAAAACAAATGTCAGATGTTGTCTCAAAATGTTCAAAATGCACCTGTAGAAATAAGTGATGCAGGAACTGGCTTTGTTGCTGTGGACCAAATGCAATCCGTTCCTGCTCAGGTGACCACAAGTTCTGTGAACGAACTTCTGGATCCAGCTTCTGGAGATGCTGTGAAAAATATTAGTTCTGATGGTTTCGAAAGAAAGTCTAAAAGCACAACTCCTTTGCGATTGAGGCACAAGGGTAAAAGTAACTCAAAATTATTAAAGAAGAAGTATATGCTAAGGTCGTTAGGAAGCAGTGACAGAGCTTTGCGGTCAAGGACAAGAGAAAAACCTAAAACACCCGAACCAAATAGTAATTTGGTTGATGTTAATAATGATGAAGTGAAGAGGAAAAGAGGGAAGAAGAAGAAAAAATTAAGAGGGGATGGAATTACTGATCAATTTTCTAAAATCAGATCTCACTTAAGATATTTGTTGAACCGAGTAAGCTATGAGCAAAGCTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATACAGTATGGAAAAATTAAAACCTGAGAAGGAGATTCAACGGGCTAAGTCAGAAATTCTTCGACGTAAATTGAAAATTAGGGATCTATTTCGGAATTTGGATTCACTATGTGCTGAAGGAAGGCTTCCAGAATCTTTGTTTGATTCTGAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAGTGCCAGTCCAAAGAGTTAAGCATCAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATTTCACCAGCTCTGTTTGGATCCTCCATTGTTATCAGAAGACATTCCACCTGGAGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATCGATCTTGTTAATGACTCCTTAGGAACAAGGCTCTCTCTTAATGACAGCTGGGAGAGGGTTTTTCCTGAAGCTGCTGCAGCTGCTGGAAATAATACGGATCACAACTTGGGACTTCCTTCTGATGATTCTGATGATGATGATTATAATCCCAATGATCTAGAGGATGTGGAGGTTGAAGGAGGTGAGTCAAGTTCTGATGAATCTGAGTATGCTTCCGCTTCTGAGAAATTGGAGGATTCACACCATGAGGATCAATACTTGGGCCTTCCTTCTGATGATTCAGAGGATGACGATTTTGATCCTAATGCTCCAGATCTTGACAATAAAGTCAAGGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTGCAATTGAAGATAACACTGGACAGGATGAAGACATCATATCTGCATCAGTGGATGATGTTAAGAACTTTAAAGGTTCTAGCAAGCAAAAACGCAAAGTTGGTAAGAAGCCATCTATGGCTGATGAACTGTCATCTTTACTGAAGGCAGATCCTGGCCAAGAGGCTTCCACTCCTGTTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGGCTTACCAAAGTGACGACACTACTAGTGATGATGAAGATTGGAGTGACACTGCTACTCCAAGAAGAAAAAAGAATCTTGCTGGCAAAATGACTTCAGGGTCACCAAATGGAAATGCCTCAGATAATGCTACACACACTCCTAGGAGGAACATCCATCAGAATAAAGTTGAAGATACATTTAATTCACCTACTAAATCACTTAAAGGGTGTTTGGAGTCTGGTTCCAGAGATAAAAAACCTGGATCTTCAACATACAAAAGACTTGGAGAAGCTGTAGTTCAGAGACTTCACCAATCTTTTAAAGAAAATCAATATCCAGATCGAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTCACTTTTCAGCAGGTTGACAAATGGTTTGGCAATACTCGATGGAGCTTCCGGAATTCATCACATATGGCGACCGGTCCAGGTAGAAATGCATCACAGCAGGTCACTGACAGCCAAGCTGAAAATAAGGGTGAGAAGGAATGTGAATTAGTAACCCAGGAGGTCAATGGAGAAAAATCAAAAACCCCAAGCTCTATAAAAAGGAAGCGTTTGTCTGAACCACAGGGATCTGAAGCACAGGTGGATGTTGATGGCACAGCAATGCCTCCTTGCTCACCAAGAGCTGATGAAAGTCAAATAGGCAATAAAATGAAGACAAGGAAAAGGAAATGA 2520 0.4111 MTSATGKSTSLNNSTTEQMGTEQCELSEKTHQIGSECLDSEQRVLGTVLTSSAIDAKSTQVSANNTENSVIQLPAPPQHCSEEGCQVVEGSCLQQSTFEQVPVHLSNDKSENKCQMLSQNVQNAPVEISDAGTGFVAVDQMQSVPAQVTTSSVNELLDPASGDAVKNISSDGFERKSKSTTPLRLRHKGKSNSKLLKKKYMLRSLGSSDRALRSRTREKPKTPEPNSNLVDVNNDEVKRKRGKKKKKLRGDGITDQFSKIRSHLRYLLNRVSYEQSLIDAYSGEGWKGYSMEKLKPEKEIQRAKSEILRRKLKIRDLFRNLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCQSKELSINNDIILCDGACDRGFHQLCLDPPLLSEDIPPGDEGWLCPGCDCKDDCIDLVNDSLGTRLSLNDSWERVFPEAAAAAGNNTDHNLGLPSDDSDDDDYNPNDLEDVEVEGGESSSDESEYASASEKLEDSHHEDQYLGLPSDDSEDDDFDPNAPDLDNKVKEESSSSDFTSDSEDLAAAIEDNTGQDEDIISASVDDVKNFKGSSKQKRKVGKKPSMADELSSLLKADPGQEASTPVSGKRNVERLDYKKLYDEAYQSDDTTSDDEDWSDTATPRRKKNLAGKMTSGSPNGNASDNATHTPRRNIHQNKVEDTFNSPTKSLKGCLESGSRDKKPGSSTYKRLGEAVVQRLHQSFKENQYPDRTTKESLAQELGLTFQQVDKWFGNTRWSFRNSSHMATGPGRNASQQVTDSQAENKGEKECELVTQEVNGEKSKTPSSIKRKRLSEPQGSEAQVDVDGTAMPPCSPRADESQIGNKMKTRKRK. 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08029 839 SUPERFAMILY FYVE/PHD zinc finger 337 405 IPR011011 -
Seca7g08029 839 ProSiteProfiles Zinc finger PHD-type profile. 345 402 IPR019787 -
Seca7g08029 839 SMART PHD_3 347 400 IPR001965 -
Seca7g08029 839 FunFam Homeobox protein HAT3.1 691 760 - -
Seca7g08029 839 Gene3D - 692 756 - -
Seca7g08029 839 Pfam Homeodomain 700 744 IPR001356 GO:0003677
Seca7g08029 839 MobiDBLite consensus disorder prediction 509 524 - -
Seca7g08029 839 FunFam Homeobox protein HAT3.1 328 407 - -
Seca7g08029 839 MobiDBLite consensus disorder prediction 206 250 - -
Seca7g08029 839 ProSiteProfiles 'Homeobox' domain profile. 703 749 IPR001356 GO:0003677
Seca7g08029 839 MobiDBLite consensus disorder prediction 446 470 - -
Seca7g08029 839 MobiDBLite consensus disorder prediction 475 495 - -
Seca7g08029 839 MobiDBLite consensus disorder prediction 747 768 - -
Seca7g08029 839 MobiDBLite consensus disorder prediction 598 613 - -
Seca7g08029 839 MobiDBLite consensus disorder prediction 639 657 - -
Seca7g08029 839 MobiDBLite consensus disorder prediction 432 700 - -
Seca7g08029 839 MobiDBLite consensus disorder prediction 769 783 - -
Seca7g08029 839 MobiDBLite consensus disorder prediction 210 224 - -
Seca7g08029 839 Pfam PHD-finger 347 402 IPR019787 -
Seca7g08029 839 ProSitePatterns Zinc finger PHD-type signature. 348 399 IPR019786 -
Seca7g08029 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 409 IPR013083 -
Seca7g08029 839 MobiDBLite consensus disorder prediction 790 804 - -
Seca7g08029 839 MobiDBLite consensus disorder prediction 1 26 - -
Seca7g08029 839 CDD homeodomain 703 750 IPR001356 GO:0003677
Seca7g08029 839 SMART HOX_1 691 753 IPR001356 GO:0003677
Seca7g08029 839 SUPERFAMILY Homeodomain-like 693 752 IPR009057 -
Seca7g08029 839 MobiDBLite consensus disorder prediction 747 839 - -
Seca7g08029 839 CDD PHD_PRHA_like 347 399 IPR045876 -
Seca7g08029 839 MobiDBLite consensus disorder prediction 161 181 - -
Seca7g08029 839 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 125 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08029 Seca-Chr7 184830055 184837052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08029 205 746 Homeobox Transcription Factor Family AT3G19510 47.183 3.61e-133 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Seca7g08029 PHD 1.5e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08029 - - gmx:100306715 1133.24