Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08016 ATGACGAGCGCTTCGGAGCTATTCCACATCAGGAGGCACCGGCTAGGACGAAATGCTCTCGATCTAGGGTTCGACTCCTCCCCTCCACCTGACCATCGTTTTCACGACTCCGACGGTAATGATTCTCTCCGTATCCGCCGCCACTACCACCTGCGCCGCCTCCGTCACCCGGAGCGTGCATCTGATAGAAATGATAGGAGATATCGCCGGTCTCTCTTAAATGATTCTGCAGAGAATAATGTTAGAGGCACTCTTAGAGCGAGTGTCAATGACAGACTACCCGTAGGTGTGCTACTTGCCAGGGCAAGACTCCTTCAGAGGTTGAGAGGGGAACCTCTCGCTAGAAACAGGCAATATGGTAGAGATTCTACGGATGATGATCAAGAAAGTGAACTGTCAAGTGAAGTTCCAACTGGGGGCTCTTTAGTTGCTGACTTGACTTCTCAAATGGGAAGGTCCCAGCTCTTGCAAGAACTAAACAAAAAGCCACCTGGACTCACTCAGGAGGCCTTGGACTGTTTGCATCTTGAAGTTTTTAGCAGCGGGGAGACAAGATTAGAATCCAGGATACTGCAGGATTGTGGCATATGCTTGGAATCTTTCACAGATGGAGATGAGCTGATACGTTTGCCATGTGGACATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCTGTTGTGGAGACTGTCCATACTGTAGAAGATGTATAGTTGTAAATAGTCACTCTCCAAAAAATGAGGCTGAGCAGTCTTTACATTGA 765 0.481 MTSASELFHIRRHRLGRNALDLGFDSSPPPDHRFHDSDGNDSLRIRRHYHLRRLRHPERASDRNDRRYRRSLLNDSAENNVRGTLRASVNDRLPVGVLLARARLLQRLRGEPLARNRQYGRDSTDDDQESELSSEVPTGGSLVADLTSQMGRSQLLQELNKKPPGLTQEALDCLHLEVFSSGETRLESRILQDCGICLESFTDGDELIRLPCGHKFHSACLDPWIRCCGDCPYCRRCIVVNSHSPKNEAEQSLH. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08016 254 MobiDBLite consensus disorder prediction 115 142 - -
Seca7g08016 254 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Seca7g08016 254 SUPERFAMILY RING/U-box 193 241 - -
Seca7g08016 254 PANTHER SI:CH211-59O9.10 18 241 - -
Seca7g08016 254 MobiDBLite consensus disorder prediction 21 41 - -
Seca7g08016 254 Pfam Ring finger domain 193 235 IPR001841 -
Seca7g08016 254 SMART ring_2 194 234 IPR001841 -
Seca7g08016 254 CDD RING-H2_PA-TM-RING 193 235 - -
Seca7g08016 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 239 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08016 Seca-Chr7 184721638 184724452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08016 1 239 C3H Transcription Factor Family AT1G49850 44.186 1.42e-48 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08016 - - gmx:548042 322.398