Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08005 ATGAGTTGCAATGGTTGCCGTGTCCTCCGAAAGGGTTGCAGTGAGGATTGCATGCTACGACATTGCCTTCTGTGGATAGAGAACCCACAAGCACAAGCTAACGCCACCCTCTTTGTTGCCAAGTTCTTCGGCCGTGCCACCCTCATGTCTTTCCTTTCCTCTGTTTCTACCAACCAAAGATCCGCTTTGTTTCAGTCACTTTTGTATGAAGCAGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGTTGTTGTGGACAGGGAACTGGCACCTCTGCCAATTGGGTGTGGAGAAAGTTCTCCGAGGTGATGGTGGTTCGTTGACCCCACTCCCTCACTTCTATGAGACTGATCTTCAGGGCTTTGAATCTCTTGCCCCTTCTTGTCATAGTCATCATCAGCAGCAGCAAGTAATGGGTTCAGCATCAAGGATGATACTCAAGAATCATGAATTAGAAGCACAATCAGAGAGAGTGGTGGTTGGAAGTGGAAGGTATCACCACCACCAACACCAAGCAAAGAAACAACGTGCGGGGACACCCTCTGAGGAATCGGAGACATCAACGTTGGGAAGCAGAGCAGAGGATTCTGTTTCTGAGAATGAAAGGAAACTCCTTCCACTATTCTTCTGA 636 0.4858 MSCNGCRVLRKGCSEDCMLRHCLLWIENPQAQANATLFVAKFFGRATLMSFLSSVSTNQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNWHLCQLGVEKVLRGDGGSLTPLPHFYETDLQGFESLAPSCHSHHQQQQVMGSASRMILKNHELEAQSERVVVGSGRYHHHQHQAKKQRAGTPSEESETSTLGSRAEDSVSENERKLLPLFF. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08005 211 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Seca7g08005 211 MobiDBLite consensus disorder prediction 163 211 - -
Seca7g08005 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 201 - -
Seca7g08005 211 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08005 Seca-Chr7 184643303 184644543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08005 1 115 AS2 family AT3G49940 73.043 1.90e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca7g08005 LOB 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08005 - - lja:Lj5g3v2099760.1 266.929