Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08002 ATGGCTTTAGAGGCTCTCAATTCTCCTACAGCACCCACAACCAATCCCTTCCCTGCTCTTAATTACGCAGAAGAAGAAGAGGAAGAGGCTGATCTTCACTTCCGTGAGCCTTGGGCCAAGAGGAAACGCTCGAAACGACCGCGTATCGAGAATCCACCCACAGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCAAAGCGGAAACAAAAACAAGAAAACCTCCCAATCATCATCTTCTCAACGAGAAGCGTCACCGTCACCGCCTATGAAGCTGACTCACAGGTGCACGGTTTGCAACAAAGCCTTTCCCTCTTATCAAGCACTCGGTGGACACAAGGCCAGTCACCGCAAATCCTCATCTGAAGCTACAACCACCACCGCCACCGCCGTCAACGACAACGTCTCCACCTCTACCGTCACCGGCGGAAGAGTGCACGAGTGTTCCATCTGTCACAAGACTTTCCCTACAGGTCAAGCACTTGGTGGTCACAAACGGTGCCACTACGAAGGAGGCAACAATCACAGTAACGTTAACGCCAACAACAGCAGTGCTGTTACGACCTCTGAGGGCGGCGCCTCCGCACACAGCCTCCGTGGCTTTGACCTGAACCTGCCTGCTCCTCTGACGGAGTTCTGGCCGCCGGTGGGATTCGAATCGAAGAAGAACAAGGTCAACATAGCCGGAAGCGGTGAACAAGAGGTGGAAAGCCCTCTGCCGGTAACCGTCAAGAGGCCGCGTTTGTTTCCCGGTGAAGATGATGAATGA 774 0.5375 MALEALNSPTAPTTNPFPALNYAEEEEEEADLHFREPWAKRKRSKRPRIENPPTEEEYLALCLIMLAQSGNKNKKTSQSSSSQREASPSPPMKLTHRCTVCNKAFPSYQALGGHKASHRKSSSEATTTTATAVNDNVSTSTVTGGRVHECSICHKTFPTGQALGGHKRCHYEGGNNHSNVNANNSSAVTTSEGGASAHSLRGFDLNLPAPLTEFWPPVGFESKKNKVNIAGSGEQEVESPLPVTVKRPRLFPGEDDE. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08002 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Seca7g08002 257 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Seca7g08002 257 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 40 209 IPR044653 GO:0003700
Seca7g08002 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 170 IPR013087 -
Seca7g08002 257 MobiDBLite consensus disorder prediction 71 95 - -
Seca7g08002 257 Pfam C2H2-type zinc finger 147 171 - -
Seca7g08002 257 Pfam C2H2-type zinc finger 96 120 - -
Seca7g08002 257 MobiDBLite consensus disorder prediction 1 53 - -
Seca7g08002 257 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Seca7g08002 257 SMART c2h2final6 96 118 IPR013087 -
Seca7g08002 257 SMART c2h2final6 148 170 IPR013087 -
Seca7g08002 257 MobiDBLite consensus disorder prediction 231 257 - -
Seca7g08002 257 Gene3D Classic Zinc Finger 94 170 - -
Seca7g08002 257 SUPERFAMILY beta-beta-alpha zinc fingers 96 170 IPR036236 -
Seca7g08002 257 MobiDBLite consensus disorder prediction 71 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08002 Seca-Chr7 184607902 184608696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08002 1 252 C2H2 Transcription Factor Family AT1G27730 44.151 7.40e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g08002 zf-C2H2_6 7.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08002 - - gmx:100819484 323.553