Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07997 ATGGAACCTACTCAGTTGATTTCTGAAGAATGGGGTTCTCTTAGTGGATTGTACACAGCTGAGGAAGCTGATTTCATGGCTCAGTTGCTTGATGGAAATACCAGTTTTAGGCCTGGCCATGAATCAACAATAGTGACCTTGACAAGCACCAATAGCAATTCATATTTTCCTTCAAATGTTGCAAATACTAATTTCCTCTGTTTCTCCCAAGGGAGTAGTCCCAGCACTGATAGAAATAATGTATTTCCTACTACAAGTGCTGGTAACTGCTGCTTGAATGATACAGTAGCCAATATTGGCTACATGTCCATGAGTGATGTTGCCAAATTCAACCCATGTAGTGTTCAAGGGAATGATAGCCAACAGATAAATGAAAACATGGATGAAGAGTTAGCTCTAGAGTTTATTGGTGACAAGAATTTGCAGGCTCACAAGGAATGTGAAGAACTGGTTTCTGAACCAGCTGAAGAGGACATAACCAGCAACCTGGAAAAGTCAGGAAAAAGATCTAGAACCTCAATGGAGGTGAGAAAGAACAAGGCAAATGTTAAAGCTAGGAAGAAACCAAAATCTTCTTCCATAAGCAACACTGAAGAGGATAGAAGTGCTGGTCGTCAGGGGCAGAGCTTGAGTAGTTGTTGCTCAGAGGATGATGACTCTAATGCTTCTCAGGAGCTAAATGGAGGAGGCTCTTCAAGCTTGAGCCTGAAGGATTCTGTAGCACTGAAGTTAAAGGGAAAATCAAGATCTAGTAGAGGTTCTGCTACTGATCCACAGAGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAGCCTGGTCCCCAATGGAACCAAGGTGGATATAAGCACCATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGACGATCTCTGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGGCTAGACCTCAATATAACCCCAACCAAACAATCATGA 1023 0.4145 MEPTQLISEEWGSLSGLYTAEEADFMAQLLDGNTSFRPGHESTIVTLTSTNSNSYFPSNVANTNFLCFSQGSSPSTDRNNVFPTTSAGNCCLNDTVANIGYMSMSDVAKFNPCSVQGNDSQQINENMDEELALEFIGDKNLQAHKECEELVSEPAEEDITSNLEKSGKRSRTSMEVRKNKANVKARKKPKSSSISNTEEDRSAGRQGQSLSSCCSEDDDSNASQELNGGGSSSLSLKDSVALKLKGKSRSSRGSATDPQSVYAKKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNITPTKQS. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07997 340 Gene3D - 254 311 IPR036638 GO:0046983
Seca7g07997 340 CDD bHLH_AtIND_like 255 317 - -
Seca7g07997 340 Pfam Helix-loop-helix DNA-binding domain 264 304 IPR011598 GO:0046983
Seca7g07997 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 252 319 IPR036638 GO:0046983
Seca7g07997 340 MobiDBLite consensus disorder prediction 196 238 - -
Seca7g07997 340 MobiDBLite consensus disorder prediction 158 180 - -
Seca7g07997 340 SMART finulus 260 309 IPR011598 GO:0046983
Seca7g07997 340 MobiDBLite consensus disorder prediction 151 266 - -
Seca7g07997 340 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 327 - -
Seca7g07997 340 FunFam Basic helix-loop-helix transcription factor 255 312 - -
Seca7g07997 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 303 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07997 Seca-Chr7 184551005 184557951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07997 10 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 42.135 3.41e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g07997 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07997 - - gmx:100817334 431.795