Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07986 ATGGCCAGTTTTGGAGGAACCACACAAAAATGCATGGCATGTGACAAAACAGTGTACCTCGTTGATAAGCTAACCGCAGATGGCCGTATTTTTCATAAGGCCTGCTTCAGGTGCCACCATTGCCGCAATACCCTTAAGCTAAGCAACTATTGTTCTTTTGAGGGGGTTCTCTATTGCAGACCTCACTATGATCAACTCTACAAGAGAACTGGCAGCCTGGACAAAAGCTTCGAAGGAACGCCCAAAATTCAGAAACCTGAAAGACAAATCACAGATAATGAGAGTACCAAGGTAATGGCCAACGTTTTCTTGGGCACAAGAGACAAATGTGTGGGTTGCAAAAAGACAGTCTATCCCACTGAGAGGGTTACCGTTAATGGGATTCCCTACCACAAGGGGTGCTTCAAATGTACCTATGGAGGTTGTACTATAAGCTCATCAAACTTTGTTACACATGAGGGAAAGCTCTACTGCAAACATCATCACATTCAACTTTTCAAAGAGAAAGGGAATTACAGTCAGCTCGAGAATGACATTACTACCATGGAAATTGCTGCTTAA 561 0.4332 MASFGGTTQKCMACDKTVYLVDKLTADGRIFHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKIQKPERQITDNESTKVMANVFLGTRDKCVGCKKTVYPTERVTVNGIPYHKGCFKCTYGGCTISSSNFVTHEGKLYCKHHHIQLFKEKGNYSQLENDITTMEIAA. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07986 186 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Seca7g07986 186 CDD LIM1_SF3 7 69 - -
Seca7g07986 186 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Seca7g07986 186 Pfam LIM domain 110 165 IPR001781 -
Seca7g07986 186 Pfam LIM domain 11 65 IPR001781 -
Seca7g07986 186 FunFam LIM domain and actin-binding 1 5 75 - -
Seca7g07986 186 FunFam LIM domain and actin-binding 1 104 174 - -
Seca7g07986 186 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Seca7g07986 186 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Seca7g07986 186 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Seca7g07986 186 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Seca7g07986 186 SMART lim_4 10 62 IPR001781 -
Seca7g07986 186 SMART lim_4 109 161 IPR001781 -
Seca7g07986 186 Gene3D Cysteine Rich Protein 6 75 - -
Seca7g07986 186 Gene3D Cysteine Rich Protein 105 174 - -
Seca7g07986 186 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Seca7g07986 186 PANTHER OS06G0237300 PROTEIN 2 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07986 Seca-Chr7 184436426 184438192 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Seca7g07986 LIM 1.6e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07986 K09377 - gmx:100306027 358.221