Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07980 ATGTCTCTCTCGCCGGACGGTAGCTTGATGTGCGGCGAAGTGATCTCCGACCACCCCTCACCACCGCCACAGGAACCCCTTCCGCCGTCGGCGGATGAGGTAGCGATCGCCGGACTCATCGATGCAGAGACCCATCACATGCCGGAGAAAGATTATCTCCAGCGCTGCCGCGACCGAATCGTGGACATCACCGCGCGCTTGGACGCTATCAACTGGATCTTAAAGGTGCACGCATTCTACAAGTTTCGGCCAGTAACGGCGTTTCTCTCCGTCAACTACTTGGACCGTTTTCTGTCATGTGCTTCTCTTCCGCAGCGACCCAGTGGATGGCCGTTTCAGCTACTATCAGTCGCTTGTTTGTCTCTTGCGACCAAAATGGAAGAACCCCGAGTGCCCCTCTTGCTCGACCTGCAATTATTCGAACCCAGATTCGTCTTCGAACCCAAAACGGTTCAGAGAATGGAGCTTTGGGTCATGGCAAAACTCAAATGGAGACTCCGCTCTGTCACTCCCTTCGATTACCTCGATTCTTTCTTTGCCAAGCTCCCTTGTTCTTCCTCTTCCGAATCAATGGACCTGTTCTTCTCCACAGCCTCCGAACTCATTCTCAACACAACCCGTGTGATTGACTTCTTGGAGTTTGCGCCGTCCACGGTAGCAGCAGCCGCCGTGCTCTGCTCAGCTGGCTACGGCCACGACATTGTTTCCACCAACGCCCAATTGCCGCTTTGTTTTCACGACAGAGTAAACCAAGAAATGGTGAGATGCTGTCACCAACTAATGGAGGAGTATGTGGTGGACACGTGTCACTTATCTCGCCATAAAGAAAGTAGAGCCGAGCCGGCGCCGCCTTGTAGCCCCATCGGCGTGCTCGACGCCGCTACTTGTGCCAGCTGTGACACCCCTTCCGACAGGAATTCCACCGGCGAACAAGCCGACCCGCCAAACAAGCGCCTGCGATCCTCTGCCCCGGATGTACCCTGA 984 0.5518 MSLSPDGSLMCGEVISDHPSPPPQEPLPPSADEVAIAGLIDAETHHMPEKDYLQRCRDRIVDITARLDAINWILKVHAFYKFRPVTAFLSVNYLDRFLSCASLPQRPSGWPFQLLSVACLSLATKMEEPRVPLLLDLQLFEPRFVFEPKTVQRMELWVMAKLKWRLRSVTPFDYLDSFFAKLPCSSSSESMDLFFSTASELILNTTRVIDFLEFAPSTVAAAAVLCSAGYGHDIVSTNAQLPLCFHDRVNQEMVRCCHQLMEEYVVDTCHLSRHKESRAEPAPPCSPIGVLDAATCASCDTPSDRNSTGEQADPPNKRLRSSAPDVP. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07980 327 Pfam Cyclin, N-terminal domain 39 166 IPR006671 -
Seca7g07980 327 SUPERFAMILY Cyclin-like 36 166 IPR036915 -
Seca7g07980 327 MobiDBLite consensus disorder prediction 299 315 - -
Seca7g07980 327 Pfam Cyclin, C-terminal domain 169 273 IPR004367 -
Seca7g07980 327 FunFam D6-type cyclin 164 259 - -
Seca7g07980 327 MobiDBLite consensus disorder prediction 299 327 - -
Seca7g07980 327 FunFam D2/4-type cyclin 49 163 - -
Seca7g07980 327 PANTHER CYCLINS 41 266 IPR039361 -
Seca7g07980 327 Gene3D - 49 167 - -
Seca7g07980 327 Gene3D - 39 259 - -
Seca7g07980 327 ProSitePatterns Cyclins signature. 66 97 IPR006671 -
Seca7g07980 327 CDD CYCLIN_AtCycD-like_rpt1 65 164 - -
Seca7g07980 327 SMART cyclin_7 71 160 IPR013763 -
Seca7g07980 327 CDD CYCLIN_AtCycD-like_rpt2 169 261 - -
Seca7g07980 327 SMART Cyclin_C_2 169 299 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07980 Seca-Chr7 184370455 184373352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07980 1 275 Core Cell Cycle Gene Families AT1G70210 43.110 1.70e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07980 K18810 - gmx:100798996 447.588