Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07960 ATGGCAAACCCAACTAAGAAGAGCAGGGGTAGGCAAAAGATTGAGATGAAGAAGATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGCAGTGGGCTCTTCAAGAAAGCTAGTGAACTTTGCACCTTATGTGGTGCTGATGTTGCTCTCATTGTGTTCTCACCCGGTGAGAAGGTCTTCTCCTTTGGCCACCCCAACGTTGATGTGGTTATCGATCGCTATTTGTCGCGGGTCCCACCGCAAAACTCGGGCACCATTGCCAACGTGCGTGAGATGAACGCGCAACTCACTCGGATCAATAACCAGCTTGAGAGTGAGAGGAAGCATGGTGATGAGTTGAACCGTATGCGAAAAGCAGCACATGCTCAGTTCTGGTGGGCTTATCCCATTGAGGAGATGAATAGGGTTCAACTTGAACAATTCAAGTTAGCCTTAGAGGAGCTTAAGAAACATGTAACTCGCTATTGTGATAGGCTCCTCATTCAAGGTGCTGCTTCTGCTGCTGTTGCTGCTACCAACCCAACTCATCATCATCACTATTTTACTGCTGCACCACCTGGTGGCTCCTCTACCAACCTGCCTCTCCTTCAGCCACCTCCTCAACCTCAGGTGTTTCCACCGCATTTCTTTCAAAACCCTATGCTGCAGAATCATTTATTTGATCATGGGGCCTTGATGCGCCACCATGGATTTAACAACATGGGAGGGTATAGAACTCCTGGATTATTCTGA 741 0.4845 MANPTKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSFGHPNVDVVIDRYLSRVPPQNSGTIANVREMNAQLTRINNQLESERKHGDELNRMRKAAHAQFWWAYPIEEMNRVQLEQFKLALEELKKHVTRYCDRLLIQGAASAAVAATNPTHHHHYFTAAPPGGSSTNLPLLQPPPQPQVFPPHFFQNPMLQNHLFDHGALMRHHGFNNMGGYRTPGLF. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07960 246 Gene3D - 21 87 IPR036879 GO:0003677|GO:0046983
Seca7g07960 246 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Seca7g07960 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Seca7g07960 246 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Seca7g07960 246 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Seca7g07960 246 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Seca7g07960 246 Coils Coil 89 112 - -
Seca7g07960 246 PANTHER MADS BOX PROTEIN 11 157 - -
Seca7g07960 246 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Seca7g07960 246 Gene3D - 88 174 - -
Seca7g07960 246 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Seca7g07960 246 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Seca7g07960 246 SUPERFAMILY SRF-like 10 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07960 Seca-Chr7 184173508 184174272 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07960 5 175 Type I MADS-box Gene Family AT5G60440 53.846 8.14e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca7g07960 SRF-TF 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07960 - - gmx:100780445 291.582