Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07949 ATGGCTGCTGTTTCCTTTCTTTGCTGTGTATTTGTAATAATCGTATCGCAAGCCAGCGCCCAGCATCCAGTATCCTGTGATAACAATAGAGGCAACTATACAGCCAATAGCACCTATGACAACAACCTCCACACCCTTTTATCCAGCTTCTCTTCCCACACAGAAATTAACTATGGTTTCTACAATTTCTCATATGGCCAAAACACAGATAAAGCATACGCCATTGGGTTGTGTAAAGGAGATCTTGAGCCAGATGAGTGCCGTAGATTACTAAACGACTCCGCCGTTTATCTCAGAAAGCAGTGTCCATACCAGAAAGAGGCAATTGTGTGGACTGGCAATTGCACGTTGTGGTACTCCAACCGCTCTATATTTGACGTCTTGGAAATTCAACCTACAATTTACTTAATCTACCAAAAGCCTGTAAATGAGGTGGATCAGTTCAATGAAATGCTCATAGACTTGATGAGAAATCTGAAAAACAGAGCTGCATCAGGCGACTCTCGTCGTAAGTATGCCACAGATAATGTTACTGATGCAACTTTTCAAACGATATATGGTCTTGTGCAGTGCATGGCTGATTTGTCAGGACAAGAATGCAATGATTGCTTGGATCAAGCTATCTCTGAAATTCAAACTTGTTGTAAGGGCAAGATGGGAGGAAATATTCTTAAACCCAGTTGTCGTCTTAGATTTGATCCCTACCGCTTCTACGGACCTACCACCATATTAGACCAAGAGGCGGCACCTTCTGCACCAGCCACCAATAACACTTCTTCACAAGGAAAGAGCAACAAAACACGAACTGTCGTCACCGTCGCCGTATCAGTGCCGGTTGTCACTGTCGTCTTGGTGTTTAGTTTTATTTGCATCTATTCAAGAATGATAAAGTCAAGAAATATTTTTGCAATTGAAAAGGGAAAAGATGATAGTGAAGATGAAATTACAATTGCTGAGTCATTGCAATTCAACTTTGACACCATACGAGTTGCTACAAGTGACTTCTCTGATTCTAACAAACTTGGACAAGGTGGATTTGGAGCAGTTTATTGGGGCAAGCTCTCTAATGGACAGGTTATTGCTGTCAAAAGATTATCAAGGAATTCTAACCAAGGAGATATGGAATTTAAGAACGAAGTGCTTTTAGTGGCCAAGCTTCAACACCGAAATTTAGTAAGACTACTTGGTTTCAGTCTAGAAGGGAGAGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGACCCCACAAGGAAAACACAATTGAATTGGGAAATGCGCTACAAAATCATTAGAGGCATTGCTCGAGGCCTTCTTTACCTTCACGAGGATTCCCGATTGCGCATTATACACCGTGATCTCAAAGCAAGCAATATTCTCTTAGATGAGGAGATGAATCCTAAGATATCAGATTTTGGTATGGCAAGATTGTTTGTTGTGGATCAAACTCAAGGAAATACAAATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGATTGTTTTCAATGAAATCAGATGTCTTTAGCTTTGGTGTACTAGTTCTTGAGATTGTAAGTGGCCAAAAAAACAGTAGGAGCATTCGTCATATGGAGAATGAGGAGTATCTTCTGGGCTTTGTTTGGAGAAATTGGAGGGAGGGGACAATTACAAACATTATAGATCCATCATTAAACAACAGTTCACGAAATGAAATGATGAGATGCATCCACATTGGCTTACTCTGTGTTCAAGAAAATTTAGTTGACAGACCAACTATGGCTACCATTGCACTCATGCTTAACAGTTATTCTCTCACTCTCCCAATACCTTCAGAACCTGCTTTTTTTATAGAAGATAGAACTAGAATGCGGTCATGGGATAATTCCGAGGCAACTAGATCAAGTGAATCCACAAATAAACTAGCTCAAGAATCGGTTAATGAAGCTTCCATTACTGACCTATACCCTCGCTAG 1992 0.4021 MAAVSFLCCVFVIIVSQASAQHPVSCDNNRGNYTANSTYDNNLHTLLSSFSSHTEINYGFYNFSYGQNTDKAYAIGLCKGDLEPDECRRLLNDSAVYLRKQCPYQKEAIVWTGNCTLWYSNRSIFDVLEIQPTIYLIYQKPVNEVDQFNEMLIDLMRNLKNRAASGDSRRKYATDNVTDATFQTIYGLVQCMADLSGQECNDCLDQAISEIQTCCKGKMGGNILKPSCRLRFDPYRFYGPTTILDQEAAPSAPATNNTSSQGKSNKTRTVVTVAVSVPVVTVVLVFSFICIYSRMIKSRNIFAIEKGKDDSEDEITIAESLQFNFDTIRVATSDFSDSNKLGQGGFGAVYWGKLSNGQVIAVKRLSRNSNQGDMEFKNEVLLVAKLQHRNLVRLLGFSLEGRERLLVYEFVPNKSLDYFIFDPTRKTQLNWEMRYKIIRGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKISDFGMARLFVVDQTQGNTNRIVGTYGYMAPEYAMHGLFSMKSDVFSFGVLVLEIVSGQKNSRSIRHMENEEYLLGFVWRNWREGTITNIIDPSLNNSSRNEMMRCIHIGLLCVQENLVDRPTMATIALMLNSYSLTLPIPSEPAFFIEDRTRMRSWDNSEATRSSESTNKLAQESVNEASITDLYPR. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07949 663 ProSiteProfiles Gnk2-homologous domain profile. 21 124 IPR002902 -
Seca7g07949 663 CDD STKc_IRAK 341 607 - -
Seca7g07949 663 FunFam Cysteine-rich receptor-like protein kinase 17 303 410 - -
Seca7g07949 663 Gene3D Phosphorylase Kinase; domain 1 297 410 - -
Seca7g07949 663 SMART serkin_6 335 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07949 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Seca7g07949 663 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 662 - -
Seca7g07949 663 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 19 124 - -
Seca7g07949 663 Pfam Protein tyrosine and serine/threonine kinase 338 603 IPR001245 GO:0004672|GO:0006468
Seca7g07949 663 Gene3D - 133 237 IPR038408 -
Seca7g07949 663 Gene3D - 21 123 IPR038408 -
Seca7g07949 663 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Seca7g07949 663 Pfam Salt stress response/antifungal 144 233 IPR002902 -
Seca7g07949 663 Pfam Salt stress response/antifungal 26 121 IPR002902 -
Seca7g07949 663 ProSiteProfiles Gnk2-homologous domain profile. 130 237 IPR002902 -
Seca7g07949 663 Gene3D Transferase(Phosphotransferase) domain 1 411 613 - -
Seca7g07949 663 FunFam Cysteine-rich receptor-like protein kinase 10 132 237 - -
Seca7g07949 663 SUPERFAMILY Protein kinase-like (PK-like) 321 631 IPR011009 -
Seca7g07949 663 ProSiteProfiles Protein kinase domain profile. 335 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07949 663 FunFam cysteine-rich receptor-like protein kinase 10 411 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07949 Seca-Chr7 184069251 184072574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07949 4 663 Receptor kinase-like Gene Family AT4G21410 48.251 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca7g07949 PK_Tyr_Ser-Thr 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07949 - - gmx:113000777 895.575