Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07948 ATGCTTCTCTTCAACACTCTCCCTGTTTCAAAGGTTGGATTTCTGCTCCTCTGTCTGTTTGGATGGCTTACGTCATCAATCTCAGCCGCTCCCATTTACAACGCTATTTACTGCCCAAACAACGCCACCTACAAATCCAACAACACATTCCAAACCAATCTCAATGTGCTCCTCTCTTCTCTCCTCACTAACGCCACCCAAGGCGTTGACTCCTATTCCACCATCATGGGCTTCGGCTCCACCAACGCCGTCAACGGCCTCTTTCTCTGCCGCGGCGATGTCTCCTCGGGAACCTGTCAGGAGTGTGTCGCCACATCAGTCACAGAGATAACACGGCTCTGCCCCAACCAAACAGAGTCAATCATATGGTACAATGAGTGCATGCTGCGTTACACGAACCGTTACTTTTCCCCTACAAGCATCGTTCCAAGAGCGAACCTGAGAGATGACAAAAACATCTCCACCTCGGATTTGGAGAGCTTCAATGAAATGTTGTCAAGCTTCTTGAGCAGTTTGGCTACAGAAGCTGCGAGTTCCCAGACAGCGAAGAAATTTGCCACAGAGGAACGGAACTTCACGGCCTCGTCCTCGCGGGTGTATGGCCTAGCGCAGTGCGCACCAGCCTTGACGAATGCTCAGTGTGAGGAGTGTTTGGTAAATGCGTCGAGAACTCTTGTCGCGTGTTGTGAAGGAAAACAAGGTGCCAGAGCCCTGCTTGCGTGGTGTAATATCAGATACGAAATGTTTCAGTTTTACAATACAAGCAATTCATCATCGCCACCAGCTCCTCCTCCTCCTTCAGAAAATAAGAAGTCCAAGTCACGAACTGCCATGATTGTTATCCTGGTTGCTGTTTCTACAATTCTCGTTTGTTCGGGCTGCTATTTCCTTATTAGAAGATCACGAAAGAATTACAAGACTCTTTTAAAAGAAAATTTTGGAGATGAAAGTGCCACTTTGGAGTCACTGCAATTTAATTTGGCGACAATTGAGGCAGCTACGAAGAAGTTTTCACCTGAGAATAAAATAGGCAAGGGAGGATTCGGAGAGGTTTACAAGGGTATTCTTATTGATGGACGGGAAATAGCTGTAAAAAAACTCTCCCATGGTTCAGGACAAGGAGCAATAGAGTTCAAGAATGAGATTTTACTTATAGCAAAACTTCAACATAGGAATTTGGTGACACTATTAGGGTTTTGCTTGGAAGATCGAGAGAAAATGCTCATTTATGAATATGTGTCCAATAAAAGTCTTGATTACTTTTTATTTGATCCTTACAAGAGCAAATTATTAAATTGGTTTGAGCGTTACAAAATCATTGAAGGAATTGCTCGAGGAATACATTACCTACACGACCATTCAAGATTGAAAGTTATACATCGTGATCTCAAACCTAGTAATGTGTTGCTAGATGATAATATGAATCCAAAAATATCCGATTTTGGCATGGCAAGAATGATTGCTTTAGATCAAGATCGAGGAAGTACAAATAGAATTGTTGGAACATATGGTTACATGTCTCCAGAATATGCAATGCATGGACAATTTTCAGAAAAATCAGACATCTTTAGTTTTGGAGTCATAATCTTGGAGGTAATTAGTTCAAAAAGGAATGCTCGCTCGCTTTTATCAGATAATGTCGATGACCTCTTGAGTAATGCTTGGAGACAATGGAAGAATCAAACACCATTACAAATATTAGACCCAAATATAAAAGAATCTTGTAACCATAGTGAAGTCATCAAGTGCATCCAAATTGGTTTATTATGTGTCCAAGAAAAGCTAGATGATAGACCAACGATAGCAAATGTTGTGTCATATCTCACTACCCCTCTAACTGAATTGCCATTTCCAGGAGAACCGACAAATTCCATGCATACTAAAATGTTGCAAAGGATGGTAGCAGGGGGGTTGAGTTCAGGTTCTATATCGTTAGTTAATGAAATGTATTCATCAGTAGAACCCGGTTCTACATTCTCTTCCAATTCTTAA 1992 0.4177 MLLFNTLPVSKVGFLLLCLFGWLTSSISAAPIYNAIYCPNNATYKSNNTFQTNLNVLLSSLLTNATQGVDSYSTIMGFGSTNAVNGLFLCRGDVSSGTCQECVATSVTEITRLCPNQTESIIWYNECMLRYTNRYFSPTSIVPRANLRDDKNISTSDLESFNEMLSSFLSSLATEAASSQTAKKFATEERNFTASSSRVYGLAQCAPALTNAQCEECLVNASRTLVACCEGKQGARALLAWCNIRYEMFQFYNTSNSSSPPAPPPPSENKKSKSRTAMIVILVAVSTILVCSGCYFLIRRSRKNYKTLLKENFGDESATLESLQFNLATIEAATKKFSPENKIGKGGFGEVYKGILIDGREIAVKKLSHGSGQGAIEFKNEILLIAKLQHRNLVTLLGFCLEDREKMLIYEYVSNKSLDYFLFDPYKSKLLNWFERYKIIEGIARGIHYLHDHSRLKVIHRDLKPSNVLLDDNMNPKISDFGMARMIALDQDRGSTNRIVGTYGYMSPEYAMHGQFSEKSDIFSFGVIILEVISSKRNARSLLSDNVDDLLSNAWRQWKNQTPLQILDPNIKESCNHSEVIKCIQIGLLCVQEKLDDRPTIANVVSYLTTPLTELPFPGEPTNSMHTKMLQRMVAGGLSSGSISLVNEMYSSVEPGSTFSSNS. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07948 663 ProSiteProfiles Protein kinase domain profile. 337 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07948 663 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 628 - -
Seca7g07948 663 Pfam Protein kinase domain 339 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07948 663 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 298 412 - -
Seca7g07948 663 ProSitePatterns Protein kinases ATP-binding region signature. 343 366 IPR017441 GO:0005524
Seca7g07948 663 ProSiteProfiles Gnk2-homologous domain profile. 141 251 IPR002902 -
Seca7g07948 663 Pfam Salt stress response/antifungal 38 133 IPR002902 -
Seca7g07948 663 Pfam Salt stress response/antifungal 156 247 IPR002902 -
Seca7g07948 663 FunFam cysteine-rich receptor-like protein kinase 10 413 615 - -
Seca7g07948 663 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
Seca7g07948 663 SMART serkin_6 337 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07948 663 CDD STKc_IRAK 343 609 - -
Seca7g07948 663 Gene3D Transferase(Phosphotransferase) domain 1 413 615 - -
Seca7g07948 663 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 136 - -
Seca7g07948 663 Gene3D Phosphorylase Kinase; domain 1 300 412 - -
Seca7g07948 663 FunFam Cysteine-rich receptor-like protein kinase 10 144 251 - -
Seca7g07948 663 Gene3D - 32 136 IPR038408 -
Seca7g07948 663 Gene3D - 146 251 IPR038408 -
Seca7g07948 663 SUPERFAMILY Protein kinase-like (PK-like) 321 626 IPR011009 -
Seca7g07948 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07948 Seca-Chr7 184058626 184063683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07948 10 618 Receptor kinase-like Gene Family AT4G05200 45.512 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca7g07948 Pkinase 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07948 - - ccaj:109813299 984.556