Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07946 ATGGCTCTCTTCAAGCTTGTTTTCTTCTTTACCTTTGTCGTCTTCAACAATTTTGTAACCACTATAGCACAGGACGACGTCAATTATCAGGGCTCAGATTGTTCAGGAGACAAAATCACCCCAAACAGCGCCTTCCAATTGAACCTCAGGACACTCCTCTCTTATTTATCTTCCAACGCCACTGGTAACAGGGAATTCTACAACACCACAGTCACCGGCAGAAACCATTCCGACACAGTCTATGGAATGTTCATGTGCTGGGGTGACATCCCCGCTCATCTCTGTAGCCAGTGCGTCAAAAACGTAACCCAGACTATGATTTTGTATTCCGAACACTCTCGAACGGCCCAGGCCCAGATATTATCCGGCCCAGGCCCAGAGGATTTATGTTCCTTGTACAAGCAGGGTATTATTCAGTATGATGAGTGCATGGTTCGGTATTCTAACCACTCTTTCTTCTCCATGGTTGACTTGAGTTCACCTTCTGGCAGCTGCTCCACTATGAGTACCGCTTCCAACTCCAACCTCCAGGCAGGGGCAAGGTTTGAGCATGTACTTTCCAAAATCATGAACGAAGTGGCAGATGAGGCAGCCAATTTTTCTATTGGTGCCAAGAAGTATGCCACAAAACAAGCAAGAATATCTGATTTCCAAACGCTTTACTGTCAAGTTCAATGCACACCAGACCTCTCACCTCAAGATTGTAGAAAGTGTCTCAATGGTACCATATCGAGTCAGCAACAATTCTGTAAAGGAAATTCGGTAGGTACGCAATCAACCCCCAGTTGTAACATCAGGTGTGACGTGTACCCTTTCTATCGTCCCAGTAATGGGCCTGCACCATCAGGACTCATTCCTGTTGCCAATCATTCAGATTCAAAATACTCACAAGATCCTGGTTATCTTTCTCACAATTGTTCAAGCAATGAAACCATGACGAGTACTGCTTTTCTATCAAATCTCAGGATCCTCTTCTCTTCCTTGTCTTCCAACGCCACAACCAAAGCCGGTTTCTTCAAGACCACAGTGGACGGTAGAAATCCCTTGGACACAGTTCATGGCCTTTTCATGTGCCGAAGTGATGTTTCCCCTGCCTTCTGTCAGCTCTGTATCCTGAACGCAACCACAAGAATATCCTTGGAATGCTCCTCCTCGAAAGAGGCAATCATTTGGTTTGATCACTGCTTGCTTCGCTATTCCAATCGATCTCTCTCCCCCACAGTGGAAACAAGTCCCAAATTTCATGAGTTTGATATGGTCAACTCTTCCAACCCCAACTTGCTGCAGAGCTTCTTCACTTGGACGCTAGCAAAAATTTTAAATAAAGTCGTGGAGACAGAGACAAGGGGCAGTACTATTAAGAATTATCGAACGAGATCAGAAAAACTGAATGATCAACAGACCCTCTATATTCTTGCTCAATGTACGCCAGATCTGTTTGTTTGGGATTGCAGCAGTTGTCTACAAAACATTTTCCAATTCGAAATTCCATGGTCTAGCTTGGCGAGTCCAGAGGGAAAAGTTCTATACCCTAGCTGCTTTATGATGTTTGGAATTTCCCAATTTTACCAGGACGGTGACGAAGCTGAGGCATTCACGCAAGCTAGTCCTCCTTCAACAACTGAAGGAACTGAGGCGTTCAGGCAAGCTTCTCCTCCAACAACTACTGCAGAAAATGAAAAGGGCAAGCCACAGACAATTATAGTTGTTGTCCCAATCATTCTTTCGGCTATACTATTTTCTTTTTGCTGCTGTTTGTTAAGGAAGAAAGCAGGAAAGAGCGGTTATAAAACTTTTCTAAAAAAGAATTTTGGTGATGAGAGTACAACCTTGGAGGGGTTGCAATTCAATTTCACTTCAATCAAAGCTGCAACAAATAACTTTTCACATGAAAACAAGATTGGCAAAGGTGGGTTTGGAGAAGTTTACAAGGGCATTCTATATGATGGACGACATATAGCTGTTAAGAGGCTTTCAACAAGGTCCAAGCAAGGTTTAGTTGAGTTCAAGAATGAGATTTTATTGATAGCCAAGTTACAACAAAGAAATCTTGTGACATTGATAGGATTTTGCCTAGAAAAGCAAGAAAAGATTCTTATTTATGAATATGTGCCAAATGGGAGCCTTGATTACTTTTTATTTGATGCTCAACAACAAAAGTTAAGTTGGTCAGATCGTTACAAAATTATAGGAGGGACTGCTCTAGGAATTCTTTATTTGCATGAATATTCTCGTCTTAAAGTTATACATCGTGATCTCAAACCAAGTAATGTTCTTTTAGATGAAAATATGAACCCTAAAATATCAGATTTTGGCATGGCCAGAATTGTTGAAATAGACCAAGATCGTGGAAATACCAATAGAATTGCCGGGACATATGGTTACATGTCTCCAGAATATGCTATGCTTGGGCAATTTTCTGAGAAGTCGGATGTTTTTAGTTTTGGTGTCATGATTTTGGAGATCATTACTGGAAAAAGGAACATAAATTCTTATGAATCACACCATGTTACTGAAAGCCTCATAAGTTATGTTTGGAAACAATGGAAGAAGCAAACACCATTAAGCATATTGGATCCAAATATAAAAGGAAATTATTCTCAAAATGAAGTTATTAAATGCATTGAGATTGGTCTATTATGTGTTCAAGACAATCCAAATGTTAGACCAACAATGGCAACAATTATTTCATATCTTAATAGTACTTCACTCGAATTTCCATATCCACAAGAACCGACATTTTTCTTATATGGTAGAGTGGATCAAGAAATAACATCACAACAAGAATCAAGTTCTGTTAATGAGATGTCTATGACAGCAGTTATGTGGTACGACGAGTGTATGGTTCGTTATTCGAACCGCTCTTTCTTCTCCACTGTTGCCACAGGGCCTGGCTATGTCCTTCCCAGCCCCACCAATATGACCAACCAGGAAAGCTTCAACCGTTTGTTGTATGACACGTTGAACAAAACTGCAGATGAAGCTGCCAATTCACCTACTGGTGCTGAAAAATTCGCCACAAAGGAAGCAAAGATATCTATATTTCAGAATCTTTATTGTCTTGCTCAGTGCACGCCAGATGTGTCTCCCAGAGATTGCAGAAGCTGTCTGTTTAGTTTGATAAACTCAGACCTTCCACGGTGCTGTGCAGGAACACAGGGAGGAAGAGTTTTGTATCCAAATTGCATCATCAGGTTTGAGATTTACCCTTTCTATCGATCCCTTACTTTGGCGCGAGATGCAAATATTCCGACACATGTGATTGTGATCATTGTTGTCCTGGTTGTCATTTTGGTGATGATTTGTTGCATTGGCTTCTGTTTCTTATGGATAAAAGCGAGGAAGAGACGTAAGGCCAGCCTCAGAGAAAACCTTGGGCTTGAAATTACTACCTTGGAGTCCTTGCAATTTGATTTGGCTACAATTGAAATAGCAACGAACAAGTTTTCTAAAGATAGCAGGATAGGTAAAGGGGGTTACGGAGAAGTCTACAAGGGAATTCTCCCTGATGGACAAGAAATAGCTGTGAAGAGACTGTCAAGAAATTCTGGGCAAGGAGTGGAGGAATTCAAAAATGAAGTGCTGTTAATAGCTAAACTTCAACACAGAAATTTGGTGAGGTTAATAGGATTTTGTCTTGAAGACAGAGAGAACATACTTATCTATGAATATGTGCCTAACAAGAGCCTTGATCACTTCTTATTCGATCCCCAAAAGCAAAGACAATTAACTTGGCCTGAAAGGTATAATATCATAAAAGGAATTGCTCGAGGAATTCTTTATCTTCATGAAGACTCTCGTCTCAAGATTATACATCGTGATATCAAACCAAGCAATGTTCTTTTAGATAATAACATGAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGCTATAGAGCAAATTCAAGGATCTACAAACAGAGTTGTAGGCACATATGGTTATATGTCTCCTGAATATGCAATGCATGGACATTTCTCAGTAAAGTCTGATGTCTTCAGTTTTGGAGTTATGGTTCTCGAGATTATTAGTGGGAAAAAGAATTCTTATACTTTTGAATCATGTCGTGTCGATGACCTCTTGAGCAATGCTTGGAATCAATGGAAGGATGAATCGCCATTTGGGTTGGTGGATCCAATTATGGTAGAATCTTATAGTCCAAAGGAAGTTGAGAGGTGTATGCAGATTGGTTTACTGTGTGTTCAAGAAAATCCAGAAGACAGACCTACAATGGGAACCGTTGTTTCATACCTTCATAATCCCTCAGTTGAGATGCCATTTCCTCTGGAACCAGCATTTTTCATGCATGGCAGAACAAGAAGACATGAATCATATTCTTCAGGTCACACCACCAATCATTCTTTCTCGTCCTCTGTAAATATGATGTCTACCACTAACTTCTTCCCCCGATAG 4419 0.4062 MALFKLVFFFTFVVFNNFVTTIAQDDVNYQGSDCSGDKITPNSAFQLNLRTLLSYLSSNATGNREFYNTTVTGRNHSDTVYGMFMCWGDIPAHLCSQCVKNVTQTMILYSEHSRTAQAQILSGPGPEDLCSLYKQGIIQYDECMVRYSNHSFFSMVDLSSPSGSCSTMSTASNSNLQAGARFEHVLSKIMNEVADEAANFSIGAKKYATKQARISDFQTLYCQVQCTPDLSPQDCRKCLNGTISSQQQFCKGNSVGTQSTPSCNIRCDVYPFYRPSNGPAPSGLIPVANHSDSKYSQDPGYLSHNCSSNETMTSTAFLSNLRILFSSLSSNATTKAGFFKTTVDGRNPLDTVHGLFMCRSDVSPAFCQLCILNATTRISLECSSSKEAIIWFDHCLLRYSNRSLSPTVETSPKFHEFDMVNSSNPNLLQSFFTWTLAKILNKVVETETRGSTIKNYRTRSEKLNDQQTLYILAQCTPDLFVWDCSSCLQNIFQFEIPWSSLASPEGKVLYPSCFMMFGISQFYQDGDEAEAFTQASPPSTTEGTEAFRQASPPTTTAENEKGKPQTIIVVVPIILSAILFSFCCCLLRKKAGKSGYKTFLKKNFGDESTTLEGLQFNFTSIKAATNNFSHENKIGKGGFGEVYKGILYDGRHIAVKRLSTRSKQGLVEFKNEILLIAKLQQRNLVTLIGFCLEKQEKILIYEYVPNGSLDYFLFDAQQQKLSWSDRYKIIGGTALGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVEIDQDRGNTNRIAGTYGYMSPEYAMLGQFSEKSDVFSFGVMILEIITGKRNINSYESHHVTESLISYVWKQWKKQTPLSILDPNIKGNYSQNEVIKCIEIGLLCVQDNPNVRPTMATIISYLNSTSLEFPYPQEPTFFLYGRVDQEITSQQESSSVNEMSMTAVMWYDECMVRYSNRSFFSTVATGPGYVLPSPTNMTNQESFNRLLYDTLNKTADEAANSPTGAEKFATKEAKISIFQNLYCLAQCTPDVSPRDCRSCLFSLINSDLPRCCAGTQGGRVLYPNCIIRFEIYPFYRSLTLARDANIPTHVIVIIVVLVVILVMICCIGFCFLWIKARKRRKASLRENLGLEITTLESLQFDLATIEIATNKFSKDSRIGKGGYGEVYKGILPDGQEIAVKRLSRNSGQGVEEFKNEVLLIAKLQHRNLVRLIGFCLEDRENILIYEYVPNKSLDHFLFDPQKQRQLTWPERYNIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNNMNPKISDFGMARMVAIEQIQGSTNRVVGTYGYMSPEYAMHGHFSVKSDVFSFGVMVLEIISGKKNSYTFESCRVDDLLSNAWNQWKDESPFGLVDPIMVESYSPKEVERCMQIGLLCVQENPEDRPTMGTVVSYLHNPSVEMPFPLEPAFFMHGRTRRHESYSSGHTTNHSFSSSVNMMSTTNFFPR. 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07946 1472 ProSiteProfiles Gnk2-homologous domain profile. 962 1071 IPR002902 -
Seca7g07946 1472 FunFam Cysteine-rich receptor-like protein kinase 25 166 272 - -
Seca7g07946 1472 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 986 1467 - -
Seca7g07946 1472 ProSiteProfiles Gnk2-homologous domain profile. 27 152 IPR002902 -
Seca7g07946 1472 ProSiteProfiles Protein kinase domain profile. 1149 1425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07946 1472 ProSiteProfiles Gnk2-homologous domain profile. 164 272 IPR002902 -
Seca7g07946 1472 SUPERFAMILY Protein kinase-like (PK-like) 612 925 IPR011009 -
Seca7g07946 1472 CDD STKc_IRAK 634 900 - -
Seca7g07946 1472 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 588 703 - -
Seca7g07946 1472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1270 1282 IPR008271 GO:0004672|GO:0006468
Seca7g07946 1472 ProSitePatterns Protein kinases ATP-binding region signature. 1155 1177 IPR017441 GO:0005524
Seca7g07946 1472 ProSitePatterns Protein kinases ATP-binding region signature. 634 656 IPR017441 GO:0005524
Seca7g07946 1472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672|GO:0006468
Seca7g07946 1472 FunFam cysteine-rich receptor-like protein kinase 10 704 906 - -
Seca7g07946 1472 Gene3D Transferase(Phosphotransferase) domain 1 1225 1427 - -
Seca7g07946 1472 Gene3D Transferase(Phosphotransferase) domain 1 704 906 - -
Seca7g07946 1472 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 299 403 - -
Seca7g07946 1472 FunFam Cysteine-rich receptor-like protein kinase 25 964 1071 - -
Seca7g07946 1472 SUPERFAMILY Protein kinase-like (PK-like) 1135 1457 IPR011009 -
Seca7g07946 1472 FunFam cysteine-rich receptor-like protein kinase 10 1225 1427 - -
Seca7g07946 1472 Gene3D - 164 272 IPR038408 -
Seca7g07946 1472 Gene3D - 299 403 IPR038408 -
Seca7g07946 1472 Gene3D - 417 522 IPR038408 -
Seca7g07946 1472 Gene3D - 26 152 IPR038408 -
Seca7g07946 1472 Gene3D - 966 1071 IPR038408 -
Seca7g07946 1472 Gene3D Phosphorylase Kinase; domain 1 594 703 - -
Seca7g07946 1472 Gene3D Phosphorylase Kinase; domain 1 1111 1224 - -
Seca7g07946 1472 ProSiteProfiles Gnk2-homologous domain profile. 299 404 IPR002902 -
Seca7g07946 1472 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 1112 1224 - -
Seca7g07946 1472 Pfam Salt stress response/antifungal 165 268 IPR002902 -
Seca7g07946 1472 Pfam Salt stress response/antifungal 34 149 IPR002902 -
Seca7g07946 1472 Pfam Salt stress response/antifungal 306 401 IPR002902 -
Seca7g07946 1472 Pfam Salt stress response/antifungal 430 517 IPR002902 -
Seca7g07946 1472 Pfam Salt stress response/antifungal 973 1068 IPR002902 -
Seca7g07946 1472 ProSiteProfiles Protein kinase domain profile. 628 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07946 1472 MobiDBLite consensus disorder prediction 533 561 - -
Seca7g07946 1472 SMART serkin_6 628 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07946 1472 SMART serkin_6 1149 1420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07946 1472 CDD STKc_IRAK 1155 1420 - -
Seca7g07946 1472 Pfam Protein tyrosine and serine/threonine kinase 631 898 IPR001245 GO:0004672|GO:0006468
Seca7g07946 1472 Pfam Protein tyrosine and serine/threonine kinase 1152 1419 IPR001245 GO:0004672|GO:0006468
Seca7g07946 1472 ProSiteProfiles Gnk2-homologous domain profile. 413 522 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07946 Seca-Chr7 183981067 184011187 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07946 296 941 Receptor kinase-like Gene Family AT4G05200 42.793 3.30e-163 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca7g07946 PK_Tyr_Ser-Thr 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07946 - - gmx:100785282 1157.9