Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07933 ATGGCGCATCAAGAAGACTCTTCATTTGGTCTTCAATCCTTAGGCGACTCTGACTCCTCACTTTTCTTCGATGAAACTGACTTTGTTGCCCTCTCTGATGACGGATATGGTCAAGACTTGCAGTTCCAAGAAACCCCAATGGCCTCTGTCATCACTTCCCATAACGCATCTTCGTCAAAGTCCGTTGAAGTTAGCCGCCTTGCTTCCAAGATAGAACAGATAGACTTCACGGCTGAATTAGATGCAGATGATTTACTCATCATCTGCGAGATTTGTGCAGAAGCCAAAGAGACTAATGTGATGTTCACTAACCAGAGATGTGGCCATTCCTTCTGCTATGACTGTGTCACCAAACAAGTGGCCGCAGAGATCCAAGACAACATATCTGTTGTTCCGTGCCCTGCTTTGAAGTGCAAGGGCGTGTTTGACCTTGATGCTTGCAGGCCAATGCTTTCCAAAGACCTTATTGATAGGTGGGATAATGCACTGTGTGAGGCTCTTTTACTTAATGCTCCAAAATTGTATTGTCCCTTTAGGGATTGTTCTGCTATGATGCTGGATGACAATGAAGGGCAAGAAATTAGGGAGTCTGAGTGCCCCTTTTGCCATAGACTCTTCTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGGTTTCCTGTGAAGACTTCCAGAAACATCTACTTGTTAGAGAGCTTGCTCATGAAAAGAAATGGAGCAGCAGGTGTCCCCAATGCAAGTTCAATGTGGAAAACACTGAAGGGTATTTGCACATGATCTGCGGGTGCGGATTTCACTTTTGCTATGTCTGTGGAAAAGAATGGACTTCTGCTCATGGTGGCTGCCAGAGAAAGTAG 855 0.4561 MAHQEDSSFGLQSLGDSDSSLFFDETDFVALSDDGYGQDLQFQETPMASVITSHNASSSKSVEVSRLASKIEQIDFTAELDADDLLIICEICAEAKETNVMFTNQRCGHSFCYDCVTKQVAAEIQDNISVVPCPALKCKGVFDLDACRPMLSKDLIDRWDNALCEALLLNAPKLYCPFRDCSAMMLDDNEGQEIRESECPFCHRLFCARCHVPWHPGVSCEDFQKHLLVRELAHEKKWSSRCPQCKFNVENTEGYLHMICGCGFHFCYVCGKEWTSAHGGCQRK. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07933 284 FunFam RBR-type E3 ubiquitin transferase 86 170 - -
Seca7g07933 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 167 IPR013083 -
Seca7g07933 284 ProSitePatterns Zinc finger RING-type signature. 107 116 IPR017907 -
Seca7g07933 284 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 56 274 IPR031127 GO:0004842|GO:0016567
Seca7g07933 284 SUPERFAMILY RING/U-box 163 227 - -
Seca7g07933 284 SUPERFAMILY RING/U-box 87 166 - -
Seca7g07933 284 ProSiteProfiles TRIAD supradomain profile. 85 284 IPR044066 -
Seca7g07933 284 Pfam IBR domain, a half RING-finger domain 161 220 IPR002867 GO:0008270
Seca7g07933 284 Pfam IBR domain, a half RING-finger domain 223 281 IPR002867 GO:0008270
Seca7g07933 284 CDD Rcat_RBR_unk 241 274 - -
Seca7g07933 284 CDD BRcat_RBR_unk 171 223 - -
Seca7g07933 284 ProSiteProfiles Zinc finger RING-type profile. 89 137 IPR001841 -
Seca7g07933 284 Gene3D - 218 284 - -
Seca7g07933 284 SMART ring_2 89 136 IPR001841 -
Seca7g07933 284 SMART ring_2 242 284 IPR001841 -
Seca7g07933 284 SMART ibrneu5 157 220 IPR002867 GO:0008270
Seca7g07933 284 SMART ibrneu5 221 281 IPR002867 GO:0008270
Seca7g07933 284 Pfam Zinc finger, C3HC4 type (RING finger) 89 134 IPR018957 GO:0046872
Seca7g07933 284 SUPERFAMILY RING/U-box 232 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07933 Seca-Chr7 183841232 183842429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07933 76 272 ARIADNE family AT3G27710 28.302 1.45e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07933 K11975 - cave:132186569 303.908