Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07932 ATGGCGCAACAACAAGAACACTCTCCCATTGGTCTTCACACCGTCGACGATTTTTACTTCTCAGCTCTCTTCGATGATGCTGGCCTCGTTCCCGTCTCCGATGACAAGTACGCTCAAGAATTGCAGTTACAGGAGACTCTGATGGCCTCTGTCACCATTTCCCCAAACGCGCCACCGCCGTCATTTTCTTCACTACCACCCTTCCTCTGCTTAGCGTCTTCATCAAAGGCCGTTGAAGTTCGCCACCTTGCCTCCATGACAAAGATGGTAGAGTTGGTCTCTGAAGAATCAGGTGAATCCTCATTCATCATCTGCGAGATTTGCGCAGAAGCGAAAGGGACTGATGAGATGTTCAGGAACCAGAGATGTGGCCATTCCTTCTGCTATGACTGTGTCACCAAACAAGTGGCCACAAAGATCCAAGACAACATAACGGTTGTTTCATGCCCTGGTTTGAACTGCAAGGGTGTTTTGGAGCTTGATGTTTGCAGGCCAATGCTTCCGAAAGAGCTTATTGAAAGGTGGGATGATGCACTGTGTGAGGCTCTTTTATCCACAGCTTCTAAATTCTATTGCCCCTTTAGGGATTGTTCTGTTATGATGTTGGATGACAATGAAGGGGAAGAAATTAGAGAGTCTGAGTGTCCCTTTTGCCATAGACTCTTCTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGGTTGGCTGTGAGGAGTTCCAGACTCTGAATGAGGATGAGAGAGGGAGGGAAGATCTCCTTGTTAGAGAGCTTGCTAGTGAAAAGAATTGGAGCAGGTGTCCCAAATGCAAGTACTATGTTGAAAAGACTGAAGGGTGTTTGCATATTACCTGCAGACTTGAAAATTTAGTTAATAAGAGTGGTGTGTTTGCAGGTGCCATTTTGAGTTTTGCTATGCGTGTGGAGAACAATGGACTTCTACTCATGGTGGCTGCCAGAGAAATTAGGTTGATTTAA 975 0.4636 MAQQQEHSPIGLHTVDDFYFSALFDDAGLVPVSDDKYAQELQLQETLMASVTISPNAPPPSFSSLPPFLCLASSSKAVEVRHLASMTKMVELVSEESGESSFIICEICAEAKGTDEMFRNQRCGHSFCYDCVTKQVATKIQDNITVVSCPGLNCKGVLELDVCRPMLPKELIERWDDALCEALLSTASKFYCPFRDCSVMMLDDNEGEEIRESECPFCHRLFCARCHVPWHPGVGCEEFQTLNEDERGREDLLVRELASEKNWSRCPKCKYYVEKTEGCLHITCRLENLVNKSGVFAGAILSFAMRVENNGLLLMVAAREIRLI. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07932 324 SUPERFAMILY RING/U-box 99 184 - -
Seca7g07932 324 FunFam RBR-type E3 ubiquitin transferase 100 186 - -
Seca7g07932 324 Pfam IBR domain, a half RING-finger domain 174 236 IPR002867 GO:0008270
Seca7g07932 324 ProSiteProfiles TRIAD supradomain profile. 101 324 IPR044066 -
Seca7g07932 324 Gene3D - 233 288 - -
Seca7g07932 324 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 71 288 IPR031127 GO:0004842|GO:0016567
Seca7g07932 324 SUPERFAMILY RING/U-box 175 240 - -
Seca7g07932 324 ProSitePatterns Zinc finger RING-type signature. 123 132 IPR017907 -
Seca7g07932 324 CDD BRcat_RBR_unk 189 239 - -
Seca7g07932 324 ProSiteProfiles Zinc finger RING-type profile. 105 150 IPR001841 -
Seca7g07932 324 SMART ibrneu5 173 236 IPR002867 GO:0008270
Seca7g07932 324 SUPERFAMILY RING/U-box 247 284 - -
Seca7g07932 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 187 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07932 Seca-Chr7 183829033 183830102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07932 83 285 C3H Transcription Factor Family AT2G19610 26.540 9.20e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07932 K11975 - cave:132186569 349.362