Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07915 ATGGAGTTCCAGAGGCGCCAAGACCAGAGCCTCTCCGAGAGGAAGGGGCAGAAGCGGAAGCTAGATGAGGAATTACAGGAGGAGCGTCAGATCTCGGTGGCGCCGCCCACCGCCGACGAACGGGCGGCCCTGCTCGCCGACATCTCCGAACAGGTGAGCGTCCTCGAGTCTACTTTCACGTGGAACGAAGCCGATCGAGCAGCGGCCAAGCGCGCCACTCATGCGCTCGCCGATCTCGCCAAGAATGAGGAAGTGGTGAATGTGATTGTAGAAGGATGCGCAATTCCGGCTTTGGTTAAGCATCTTCAGGCGCCGCCTCTGAGTGACTGTGTTCAGAAGCCATTGCCATTTGAGCACGAGGTTGAGAAAGGGAGCGCTTTCGCGCTAGGACTTCTTGCCGTCAAGCCAGAACATCAGCAGCTCATTGTTGACAGTGGTGCCTTAACACATCTTGTTGATCTTTTAAAGAGGCATAAAAATGGCTTAACTTCTCGTGCTATTAATAGTCTCATTCGTAGGGCTGCAGATGCCATTACTAATCTTGCTCATGAGAATAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACCCTAGCTTTTAAAAATGATGAAAACAAAAATCAGATTGTAGAATGCAATGCTCTTCCGACTCTGATTCTAATGCTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTCCACTCTTCTCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGGGCTTTACAACCTGTTATCGGATTACTTAGCTCCTGCTGCTCTGAAAGCCAGAGGGAAGCAGCATTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAAGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAGCTCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGTTTAGTGCCATTGCTCAAACTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAAACTGCAGGAAGGAGAGTTTATTGTCCAAGCAACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGCCGTGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGGTTTTCAAAGACGAGTTGCTTTGGCTCTTGCGCATCTTTGTTCTGCAGATGATCAAAGAAGAATTTTTATTGATCACCATGGTCTTGAGTTACTTATTGGGCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGATGGTGCCGTGGCTTTATGCAAGTTGGCCAATAAAGCCTCGACTTTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCCCAGGTAGGCTTAAATCCAGTTAGATTGACCTTAGTTCTCACAATCTCACTGCCTGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACATTGTCTGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTACTTGCATCTTCAGATGCATTTCGGGCCATGTTTGACGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACAGGATCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTCAAGAGACTCTGTGAGTACACAATTGCACAGGATATATCACTGGATAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAGGCACGCATGCATCCTTTTTATCTTGGAGCAATTTGACAAGTTGAGTGCAAGACCAGGGCACTCTCTTCTGATTCAGCGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGCCAACTCCCATAACAATCGACTTTAG 2172 0.4498 MEFQRRQDQSLSERKGQKRKLDEELQEERQISVAPPTADERAALLADISEQVSVLESTFTWNEADRAAAKRATHALADLAKNEEVVNVIVEGCAIPALVKHLQAPPLSDCVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGFQRRVALALAHLCSADDQRRIFIDHHGLELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVGLNPVRLTLVLTISLPVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLDNVSSMYELSEAFNAISLRHACILFILEQFDKLSARPGHSLLIQRIIPEIRNYFVKALTKANSHNNRL. 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07915 723 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Seca7g07915 723 Gene3D - 207 412 IPR011989 -
Seca7g07915 723 Gene3D Potassium Channel Kv1.1; Chain A 545 682 IPR011333 -
Seca7g07915 723 MobiDBLite consensus disorder prediction 1 29 - -
Seca7g07915 723 FunFam Armadillo/beta-catenin repeat family protein 547 691 - -
Seca7g07915 723 Gene3D - 413 528 IPR011989 -
Seca7g07915 723 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 718 IPR044282 -
Seca7g07915 723 SMART BTB_4 556 653 IPR000210 GO:0005515
Seca7g07915 723 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Seca7g07915 723 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Seca7g07915 723 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Seca7g07915 723 CDD BTB_POZ_ARIA_plant 543 658 - -
Seca7g07915 723 ProSiteProfiles BTB domain profile. 556 623 IPR000210 GO:0005515
Seca7g07915 723 SUPERFAMILY ARM repeat 51 411 IPR016024 -
Seca7g07915 723 Pfam BTB/POZ domain 549 651 IPR000210 GO:0005515
Seca7g07915 723 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Seca7g07915 723 SMART arm_5 135 183 IPR000225 GO:0005515
Seca7g07915 723 SMART arm_5 269 309 IPR000225 GO:0005515
Seca7g07915 723 SMART arm_5 352 392 IPR000225 GO:0005515
Seca7g07915 723 SMART arm_5 185 225 IPR000225 GO:0005515
Seca7g07915 723 SMART arm_5 227 267 IPR000225 GO:0005515
Seca7g07915 723 SMART arm_5 311 351 IPR000225 GO:0005515
Seca7g07915 723 SMART arm_5 82 134 IPR000225 GO:0005515
Seca7g07915 723 SMART arm_5 467 507 IPR000225 GO:0005515
Seca7g07915 723 MobiDBLite consensus disorder prediction 1 31 - -
Seca7g07915 723 SUPERFAMILY POZ domain 548 650 IPR011333 -
Seca7g07915 723 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Seca7g07915 723 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Seca7g07915 723 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Seca7g07915 723 Gene3D - 38 206 IPR011989 -
Seca7g07915 723 SUPERFAMILY ARM repeat 437 508 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07915 Seca-Chr7 183611199 183620358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07915 198 506 U-box Gene Family AT3G46510 26.129 5.30e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca7g07915 BTB 6.3e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07915 - - gmx:100784348 1255.74