Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07894 ATGGAATTTACTACTGAATTCCTTGTTTCTTTTGTAACATTTTCTCTGCTCTTCATCTGTTCTAGAGCTCAAAGGAGCACTAATAACTCTATTGAATTGGGCTCCAGTATTGTTGCTGGCACTAATTCATCATGGCGATCACCCTCTGGTGATTTTGCCTTTGGGTTCTACCACCCTCTTGGTAGTGCTCACTATCTGCTTGGAATTTGGTTTGATAAGATTCCACAGAAAACCTTGGTTTGGTCTGCAAACCGTGATGATCCAGCTCAAATTGGCTCAACCATCAATCTCACAATCAGTGGCCAACTTGTGCTGCACCATGCCAATAACACTTCATTTCTAATCTACAATGGCACAGATGCAACTTCTGCTAGGATGCAGAATAATGGGAATTTCATCTTGATGAACTCTCTTTCAAACATCATTTGGCAGAGTTTTGATTCACCAACAGATACTATTCTACCAGGCCAAACATTGGACATGGGTCAGATGCTTTTTTCCAATGCCAATGGAACAATAGACTACTCAACTGGCCAATATAAGTTGGAGGTTCAAAAATTTGATGGCAACATTGTTATCTCTGCTTTTCGGTTTGAGGATCCTGGATATTGTTGCAGGAATGAAGTGATGGATGACTGCTTCTGCATGGCTGGTGTTTTGATTGACTCAGTTTGTTACAAGAAAAGGACACCTCTTTTAAATGCCAGAATAAGCATCCCTGCCACTAGCAATAGAGTGGCACTGATTAAAGTTCTTCAAAATCAAACTCATGAAGATGATGACAATGATTCACCTTCTAAGGTCGTTTTGATTGTATCCCTCACAGCATGTTCCTTACTTGCTGTGGTGTTTGCAGCTATCGCTATCTATCATCACCCAACATTCTGCCATCTCATGAAGAAAGAGGCACCTCCAAAGCCAAAGCCTGTGGACATCAATCTAAAGGCATTTTCATTCCAAGAGTTGAGAGAAGCAACAGATGGGTTCAAGAACAAACTTGGCCATGGAGCCTTTGGGACTGTATATAGTGGTGTTTTGACCTTGGAGGGTGAACAGGTTGAGGTTGCTGTGAAACAACTGGAAATAGTAGAGGAAAAAGGTGAAAAAGAATTTGTTAATGAAGTTCAAGTAATTGGTATGACTCATCACAAGAATCTTGTAAGATTATATGGTTTCTGCAATGAGCAGAACCATCGTCTTTTGGTTTATGAAATGATGAGAAATGGGACATTATCCAATTTCCTTTTTAAGGAGGAGGATAAACCCAGTTGGGAACATAGAGTCAAAACTGTTCTTGAAATTGCTAGAGGCTTGTTGTACCTGCATGAAGAGTGTGACCCCCAGATCATCCACTGTGACATAAAGCCACAAAATGTTCTTCTTGACTCAAATTATACTGCAAAAAATGCAGATTTTGGATTAGCAAAGCTACTAATGAAAGACAGAACTCGAACAAGCACAATTGTAAGAGGGACAATGGGATATTTGGCACCAGAATGGCTCAAAAATGCACCCATCACTGCAAAAGTGGATGTGTACAGCTTTGGAGTCTTGTTGTTGGAAATCTTATTTTGCAGAAGGCACATTGAGCTGCATCAAATTGAAGACAGAGCCGAAGGTGGTGAGGAAATGATACTTGTAGATTGGGTTTTGTATTGGGCAAAGGAAGGGAATCTAAGAGTCATTGTGAGCCATGATCTTGAAGTTGTTAACGATTTCAAGAGGTTTGAGAGAGTGGCAATGGTTGGATTGTGGTGCCTATCTCCTAACCCAACTCTTAGGCCATCTATTGCAAAGGTGATACACATGTTGGAAGGAAATACAGAAGTTGGTGTTCCACCATTGTTTGATGGCCAAATGTTATAA 1866 0.4051 MEFTTEFLVSFVTFSLLFICSRAQRSTNNSIELGSSIVAGTNSSWRSPSGDFAFGFYHPLGSAHYLLGIWFDKIPQKTLVWSANRDDPAQIGSTINLTISGQLVLHHANNTSFLIYNGTDATSARMQNNGNFILMNSLSNIIWQSFDSPTDTILPGQTLDMGQMLFSNANGTIDYSTGQYKLEVQKFDGNIVISAFRFEDPGYCCRNEVMDDCFCMAGVLIDSVCYKKRTPLLNARISIPATSNRVALIKVLQNQTHEDDDNDSPSKVVLIVSLTACSLLAVVFAAIAIYHHPTFCHLMKKEAPPKPKPVDINLKAFSFQELREATDGFKNKLGHGAFGTVYSGVLTLEGEQVEVAVKQLEIVEEKGEKEFVNEVQVIGMTHHKNLVRLYGFCNEQNHRLLVYEMMRNGTLSNFLFKEEDKPSWEHRVKTVLEIARGLLYLHEECDPQIIHCDIKPQNVLLDSNYTAKNADFGLAKLLMKDRTRTSTIVRGTMGYLAPEWLKNAPITAKVDVYSFGVLLLEILFCRRHIELHQIEDRAEGGEEMILVDWVLYWAKEGNLRVIVSHDLEVVNDFKRFERVAMVGLWCLSPNPTLRPSIAKVIHMLEGNTEVGVPPLFDGQML. 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07894 621 ProSitePatterns Protein kinases ATP-binding region signature. 333 358 IPR017441 GO:0005524
Seca7g07894 621 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 25 147 - -
Seca7g07894 621 CDD B_lectin 47 149 IPR001480 -
Seca7g07894 621 ProSiteProfiles Protein kinase domain profile. 327 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07894 621 ProSiteProfiles Bulb-type lectin domain profile. 30 147 IPR001480 -
Seca7g07894 621 Gene3D Transferase(Phosphotransferase) domain 1 406 611 - -
Seca7g07894 621 Pfam Protein kinase domain 330 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07894 621 Gene3D Phosphorylase Kinase; domain 1 301 405 - -
Seca7g07894 621 SUPERFAMILY Protein kinase-like (PK-like) 308 605 IPR011009 -
Seca7g07894 621 Pfam D-mannose binding lectin 78 161 IPR001480 -
Seca7g07894 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Seca7g07894 621 SMART blect_4 36 149 IPR001480 -
Seca7g07894 621 Gene3D - 24 145 IPR036426 -
Seca7g07894 621 Gene3D - 146 203 IPR036426 -
Seca7g07894 621 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 193 IPR036426 -
Seca7g07894 621 FunFam S-receptor-like serine/threonine-protein kinase 297 405 - -
Seca7g07894 621 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 204 614 - -
Seca7g07894 621 SMART serkin_6 327 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07894 621 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 406 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07894 Seca-Chr7 183351804 183354163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07894 264 615 Receptor kinase-like Gene Family AT5G03140 37.571 2.13e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca7g07894 Pkinase 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07894 - - aprc:113871840 649.047