Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07890 ATGAATGGTGCTTCAAGTGTTGAGGCAGAGTACTCTGAGTTTGTGGAAGTTGATCCTACGGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTCTACAAAGCATTTGATGAGTATGAAGGAATAGAAGTAGCATGGAATCAAGTAAAGCTTTACGATTTTTTGCAGAATCCTGAAGACCTTGAGAGGTTATACAGTGAAATTCATCTCCTCAAGACATTGAAACACAAGAATATCATGAAGTTCTATACTTCTTGGGTTGATACTACAAACAGGCACATTAACTTTGTCACTGAGATGTTTACCTCTGGAACTCTAAGACAGTACAGGCTTAAACACAGAAGGGTAAACATCAGAGCTGTTAAACATTGGTGCAGGCAGATTTTGGAAGGGCTCCTATATCTTCACAATCATGACCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAACATTTTCATCAATGGTAACCAAGGGGAAGTCAAAATTGGTGATCTTGGCCTTGCTGCAATTCTCCGCAAATCTAATGCTGTTCGCTGTGTTGGCACACCTGAGTTTATGGCTCCAGAAGTGTACGAAGAGGATTACAATGAATTGGTTGACATATACTCTTTTGGAATGTGTGTCTTGGAGATGGTAACCTTTGAATATCCTTATAGTGAATGCAACCATCCGGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAAACGATCCTGAGGTTAGACAGTTTGTAGAGAAATGTTTAGCAACTGTGTCCCTCAGACTTTCAGCCAAGGAACTCTTGGAGGACCCTTTTCTCCAAATTGATGATTATGGATCTGACTTAAATGCGGTACAGTATCAAAGAGATTGCTATGACTATGAAGTAACCCCAACAATTAGACATCCTTTGAATGAATTTCATGGCATTAACCACACCTTAATGAGTGGGTATACTGATAATCTTAGTGGTTATGGACCTGTATCTGAATTGGATTATCTTCAAGATGATTTTGAAAGGAGTGAAATTGATCTCTTTGATTGCGAAGAGGATGATAATTTGGCTGTAGTTGACACCACAATCAAAGGTAGGAGAAGAGAAGATGATGGCATCTTTCTGAGAATCAGAATAGCAGATAAGGAAGGTTGGTATTTCAACTTGTTATTTTATTCTTGA 1200 0.3892 MNGASSVEAEYSEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYEGIEVAWNQVKLYDFLQNPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTTNRHINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILEGLLYLHNHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAVRCVGTPEFMAPEVYEEDYNELVDIYSFGMCVLEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVNDPEVRQFVEKCLATVSLRLSAKELLEDPFLQIDDYGSDLNAVQYQRDCYDYEVTPTIRHPLNEFHGINHTLMSGYTDNLSGYGPVSELDYLQDDFERSEIDLFDCEEDDNLAVVDTTIKGRRREDDGIFLRIRIADKEGWYFNLLFYS. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07890 399 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Seca7g07890 399 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Seca7g07890 399 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 390 - -
Seca7g07890 399 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07890 399 Gene3D Phosphorylase Kinase; domain 1 7 105 - -
Seca7g07890 399 CDD STKc_WNK 22 281 - -
Seca7g07890 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Seca7g07890 399 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07890 399 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Seca7g07890 399 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07890 399 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07890 Seca-Chr7 183291882 183295800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07890 1 397 MAP Kinase Kinase Kinase AT3G22420 62.587 1.10e-180 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca7g07890 Pkinase 9.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07890 K08867 - gmx:100804179 715.301