Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07847 ATGCAGAATTCACCTGTATTCAGCTTTATCAGTAATCTATCTCCTATAAAACACGTAAAGTCTGTTCACATTACTCAGACACTCAACTCACTCAGCTTTTCATCCCCTCCATCAGTTTTCACATCACCCCATGTCAACTGTAACGAGGAATCAAGATTCCTCAGGAGGCATAACCTTTTGGGCCCATCAAAGCCTAACGTTTCATCTGAAGATGTAAATAAAATATCTTCACATGAAGAGGCTCCTACAGATTCAACCCATGCTTGTCATGACTCAATTGAAACATCTAAGGCTCCTACAGATTCAACCCATGCTTGTCATGACTCAATTGAAACATCTAATGAACACATTGAGCTTCCACAAGCCTTAAATTATAATTCTGGAAGCCTTGGATATGATCCTCTACTTTGCGGTGATGAGGCTAACTCTCTTCTGGAATTGCCTGGCAAGCCAGCATCAGATGTCAGCTATGTTCAGGAAGGCCTTAAAAATGTTTCTGTTGATGGTGAAACCCATCTTCAGGCATTTTGTCAGCGTGAGGCAAAAATTGAAGGCCCAGACTCGGATTTGGATACTTTAATTACTTATGCCTCTGATCTGTTAATTTTTAGGTCCCCAAATGTGCCGCAAGCTCTTGAGGGCCTAATGAATAAACAACTGGATCCTTCGATACCGCATAGAAATTTTATGACTCTGTTACCACAATCTACAGCTAATAATGGTCATGAAATGCATGTTGTTAATCCAGTTGCTTCTGGTTCAGAACATGAAATTGTAGACTTTCCTTCTGAACCAATAGCAGCCACAGATGCAGGTCAGACACAGGATAATCTTGCCAATGTTGCTTTGATGGCTAGCAATCCAAGTGAGAAAGTGGATAATCAGGTTGTTTATGTGACACACCCGAGGCGCAGTCTAGACTTTGAGATGGCCAGTGTGCAAAGGAAGAATACAGGTGATAGTTCAAACATCTATTCCAGTGCAGCAAGGTCTGATGAGAGGGATGTTGGTAATATGAAACAGACTGGTGACTCAGGGAAAGGTGTTTTGCCGAGAATTGGTTTGCACTTGAATGCACTTGCAACCTTAAAACATTACAGAAGTATAAAAGGTGAAATGGTGTCTTCTGAAAGGCAACCTAATCTGCCCAGCTCTACTTCCTTGCATCTCCCTCCAAACCAAGAGCATCACCTATCATCAGTACCTCCATCAATGGAAAGAGATTTGGAGCCATCTAAAAATGAGGTTCAGCCCGCGGAAAATTGTACCCAGTCATCAGTTTACATGGCTGGTGAAGATTTCCATCAGAATAGCCCCAAAAAGAAAAGGAAAGTACAGTTGCGCAAGTTGGAATCAGCTGGGGAAGGGGAGTCCTGTAAGCGGTGTAATTGTAAGAAATCAAAGTGTTTGAAGCTTTACTGTGAGTGCTTTGCTGCTGGAGTCTTCTGCAAAGAACCTTGCTTATGTCAGGACTGTTTCAACAAACCTAATCATGAAGATTTAGTTACTCAAACTCGCAAGCAGATCCTGTCTCGTAACCCACTTGCGTTTGCTCCTAAAGTCATAAGGAGTTCTGATTCTGCACCTGGAATTGGGCAGGAACCTAACAGAACTCCAGATTCAGCACGACATAAAAGAGGATGCAATTGCAAGAAATCAAGCTGCCTGAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCGTTAGCTGCAGATGTGAAGGGTGCAAGAACACATATGGTAGAAAGGATGGTTCTCCTCCTGCTGAAAGAGTAGTAGCTGAAACTGAAGAAGAAACAAAAGCATATGAAAAGGGTGTGGTGGAAAGAGCTTCACAGAAAACTGAAATTCAGAATATCAATGACCGTCCAGATTGTGCTCTTCCCACAACACCATCACAGCTTTCTAGATCATTGCTTCCGTTACCCTTTGATGCATCAAAGGGAAAGCATCCAAGATCTTTTGTTACTACCATCCCCTCTTCTGGAATTTTTGGCATTGGGAATTCAAATGCTTTTCGGTTTGAACCTAAGTTTGAAAAGGCTCTTGAAACTGTTCCAGATGATGACTCTCCAATCACTTGCATCAAAACTTCTTCCCCGAATGGCAAGAGGATCTCCTCTCTTAATTGTGCCTCTGGATCATCATCTCCTACTCGCAGAGGTAGCACGAAGATGATATTACAATCCATCCCGCCATTTCCTTCTCTCACCCATCACCATCAGTAG 2235 0.4246 MQNSPVFSFISNLSPIKHVKSVHITQTLNSLSFSSPPSVFTSPHVNCNEESRFLRRHNLLGPSKPNVSSEDVNKISSHEEAPTDSTHACHDSIETSKAPTDSTHACHDSIETSNEHIELPQALNYNSGSLGYDPLLCGDEANSLLELPGKPASDVSYVQEGLKNVSVDGETHLQAFCQREAKIEGPDSDLDTLITYASDLLIFRSPNVPQALEGLMNKQLDPSIPHRNFMTLLPQSTANNGHEMHVVNPVASGSEHEIVDFPSEPIAATDAGQTQDNLANVALMASNPSEKVDNQVVYVTHPRRSLDFEMASVQRKNTGDSSNIYSSAARSDERDVGNMKQTGDSGKGVLPRIGLHLNALATLKHYRSIKGEMVSSERQPNLPSSTSLHLPPNQEHHLSSVPPSMERDLEPSKNEVQPAENCTQSSVYMAGEDFHQNSPKKKRKVQLRKLESAGEGESCKRCNCKKSKCLKLYCECFAAGVFCKEPCLCQDCFNKPNHEDLVTQTRKQILSRNPLAFAPKVIRSSDSAPGIGQEPNRTPDSARHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNTYGRKDGSPPAERVVAETEEETKAYEKGVVERASQKTEIQNINDRPDCALPTTPSQLSRSLLPLPFDASKGKHPRSFVTTIPSSGIFGIGNSNAFRFEPKFEKALETVPDDDSPITCIKTSSPNGKRISSLNCASGSSSPTRRGSTKMILQSIPPFPSLTHHHQ. 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07847 744 MobiDBLite consensus disorder prediction 314 347 - -
Seca7g07847 744 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 2 741 IPR044522 GO:0003700
Seca7g07847 744 MobiDBLite consensus disorder prediction 58 106 - -
Seca7g07847 744 MobiDBLite consensus disorder prediction 708 733 - -
Seca7g07847 744 MobiDBLite consensus disorder prediction 73 91 - -
Seca7g07847 744 MobiDBLite consensus disorder prediction 314 329 - -
Seca7g07847 744 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 460 495 IPR005172 -
Seca7g07847 744 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 546 581 IPR005172 -
Seca7g07847 744 MobiDBLite consensus disorder prediction 374 418 - -
Seca7g07847 744 MobiDBLite consensus disorder prediction 708 744 - -
Seca7g07847 744 ProSiteProfiles CRC domain profile. 458 583 IPR005172 -
Seca7g07847 744 SMART CXC_2 543 584 IPR033467 -
Seca7g07847 744 SMART CXC_2 457 498 IPR033467 -
Seca7g07847 744 MobiDBLite consensus disorder prediction 374 400 - -
Seca7g07847 744 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07847 Seca-Chr7 182810258 182815501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07847 1 739 CPP Transcription Factor Family AT3G22780 38.351 3.88e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca7g07847 TCR 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07847 - - gmx:100811662 902.123