Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07842 ATGGCTTCTCATTCCTCAAAAACAAAAGGCCTTAATAATTATGGTCTTTCTATACCATTCTGGGTCTCCCTCATTGTGATTCTCATCTCCATCAACCCCTCACACCAAACTACTGAATACCCTTTCCCCCAACTAAACCCAAGGCTCTCTAAAGCTTACAAAGCTCTCCAAGCATGGAAACACTCAATCACCTCTGACCCCAAAAACTTCACCTCCAACTGGTGTGGTCCCCATGTATGCAACTACACTGGTATCTACTGTGCACCAGCACCAGATGACCCTCACATGAATACAGTTGCTGGAATAGACTTAAACCATGGCAACATAGCTGGTTCATTGCCAGAGGAACTTGGCCTCTTAACTGATCTAGCCCTTTTCCACATAAACTCCAACCGCTTCTGTGGTTCACTCCCAAGTAGCTTTAGCAACCTTCAACTTCTCTTTGAGTTAGATATCAGCAACAACCAATTCTCAGGACCATTCCCTGAGGTTGTTCTCTGTCTTCCTTCACTGAAATTCTTGGATATCAGATTCAATGGGTTCCAAGGCAATGTTCCTTCACGCCTTTTCGACCTTAAACTTGATGCTCTGTTCATCAACAACAACAAATTTCAATTCTCTTTGCCTGAAAACTTTGGAAACAGTCCTGCTTCTGTGGTTGTGTTTGCAAACAATGACCTCAAGGGTTGTATTCCATCAAGTTTGGCGAAAATGAAGGATACTCTTAATGAGATTATCATAATGAATAGTGGGTTAAGGGGTTGTTTGCCACCGGAAATTGGGGATTTGGAGAAAGTGACAGTGTTTGATGTGAGTTTCAACAAATTGGTTGGAGAATTGCCAGAGTCAATGGGAAGGATGAAGAGTTTGGAGCAGTTGAATGTGGCGCATAACAAGTTGTCTGGTACAATTCCAGAGAGTATATGCAAGTTGCCAAGGTTGGAGAATTTCACATATTCATACAACTACTTCTGTAGTGAATCACCAGTGTGTCTGAAATTGCCAGATAAGGATGATCGTAAGAACTGTATTCCTTATAGGCCATTGCAAAGGTCAACTAAGGATTGTGCAGCTTTTTATGCACATCCTGTTCACTGTAGCGCGTTTGGTTGCTCCGTTGCAAGTCCTCCACCACCACCACCACCACCACCGTCTCCATCACCCCCTCCCCCACCTCCGCCTCCTCCTCCACCTCCGCCACCTCCACCACCTCCACCTCCGCCACCCCCACCTCCACCTCCTCCACCACCGCCGCCACCTCCTCCTCCACCACCGCCGCCACCGGCAGCTTACTACCATTATCCCTGA 1308 0.4625 MASHSSKTKGLNNYGLSIPFWVSLIVILISINPSHQTTEYPFPQLNPRLSKAYKALQAWKHSITSDPKNFTSNWCGPHVCNYTGIYCAPAPDDPHMNTVAGIDLNHGNIAGSLPEELGLLTDLALFHINSNRFCGSLPSSFSNLQLLFELDISNNQFSGPFPEVVLCLPSLKFLDIRFNGFQGNVPSRLFDLKLDALFINNNKFQFSLPENFGNSPASVVVFANNDLKGCIPSSLAKMKDTLNEIIIMNSGLRGCLPPEIGDLEKVTVFDVSFNKLVGELPESMGRMKSLEQLNVAHNKLSGTIPESICKLPRLENFTYSYNYFCSESPVCLKLPDKDDRKNCIPYRPLQRSTKDCAAFYAHPVHCSAFGCSVASPPPPPPPPPSPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAAYYHYP. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07842 435 Pfam Leucine rich repeat N-terminal domain 53 87 IPR013210 -
Seca7g07842 435 FunFam Leucine-rich repeat extensin-like protein 1 53 214 - -
Seca7g07842 435 Gene3D Ribonuclease Inhibitor 218 335 IPR032675 -
Seca7g07842 435 Gene3D Ribonuclease Inhibitor 50 217 IPR032675 -
Seca7g07842 435 PRINTS Proline rich extensin signature 391 412 - -
Seca7g07842 435 PRINTS Proline rich extensin signature 412 428 - -
Seca7g07842 435 PRINTS Proline rich extensin signature 379 391 - -
Seca7g07842 435 MobiDBLite consensus disorder prediction 376 422 - -
Seca7g07842 435 FunFam Leucine-rich repeat extensin-like protein 5 215 355 - -
Seca7g07842 435 SUPERFAMILY L domain-like 53 333 - -
Seca7g07842 435 Pfam Leucine rich repeat 124 180 IPR001611 GO:0005515
Seca7g07842 435 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 39 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07842 Seca-Chr7 182755540 182756847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07842 43 381 Leucine-rich Repeat extension Gene Families AT3G22800 69.706 3.37e-165 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07842 - - gmx:100818195 613.994