Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g07837 | ATGGCTGGTAGACTACCTGGTGTTGGGTTACCACCCAGGAAGAGATCAGAACACCACCATAATAATAGATTCCGAGACTCCTACCTAAGGGATAATTCATTGGACTCACCATGGATTTCAGTAAGTGCCTTAGATGAAACTGCTCTCAAGGCCAGACAACGCCTCCAGAAGAAGCTTGGTCACTTCTTTTCTTATTCCAGGTCAAGTGAGAGCAGCAATCCGAAAAAAGAAGGAAAAGTGAGTGAAATTAACAGGTTGGAGAAGAAGAAGGAATCGGGGTTAGGTAGGAAGATACTAGAAAGTTCATGGTTATTGCGTGGGAACAAGTTTAAGAAAGAGAGAAAAGTTTGTGCTGTTTGCCTAGAATATTTCGAGGAAGACCAAGAGGTTATGAACCTTTCTTGCTCCCACAAGTACCATTCAGCATGTCTTCTCCCCTGGCTTGCAGCTCATCCCCATTGTCCCTGTTGTCGAACCTTAGTCCACTGTTGA | 492 | 0.4431 | MAGRLPGVGLPPRKRSEHHHNNRFRDSYLRDNSLDSPWISVSALDETALKARQRLQKKLGHFFSYSRSSESSNPKKEGKVSEINRLEKKKESGLGRKILESSWLLRGNKFKKERKVCAVCLEYFEEDQEVMNLSCSHKYHSACLLPWLAAHPHCPCCRTLVHC. | 164 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g07837 | 163 | CDD | RING-H2_PA-TM-RING | 116 | 158 | - | - | |
Seca7g07837 | 163 | MobiDBLite | consensus disorder prediction | 65 | 84 | - | - | |
Seca7g07837 | 163 | ProSiteProfiles | Zinc finger RING-type profile. | 117 | 158 | IPR001841 | - | |
Seca7g07837 | 163 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 49 | 159 | - | - | |
Seca7g07837 | 163 | SUPERFAMILY | RING/U-box | 116 | 161 | - | - | |
Seca7g07837 | 163 | SMART | ring_2 | 117 | 157 | IPR001841 | - | |
Seca7g07837 | 163 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 162 | IPR013083 | - | |
Seca7g07837 | 163 | Pfam | Ring finger domain | 116 | 158 | IPR001841 | - | |
Seca7g07837 | 163 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g07837 | Seca-Chr7 | 182711290 | 182717980 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g07837 | 109 | 161 | C3H Transcription Factor Family | AT1G49850 | 43.396 | 9.37e-12 | 59.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g07837 | - | - | gmx:100527548 | 221.476 |