Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07827 ATGAATCGTCACGGTGGTGGAGTGAAGGAAGAGTTTCTGGGAGAAAGTTCGTCCTTTTATCAGCATCCATCAATGATGGTTTCTCCCCAACCACAACCAATTGAAGGGCTTCATGAAGGTGGTCCTCCTCCATTCCTCACTAAGACATATGACATAGTTGATGACCCTTCCACAAATCACATAGTTTCATGGAGCACTGCCAACAACAGCTTCGTTGTGTGGGATCCCCAAGCCTTCTCCATAGCCCTTCTTCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGACAACTTAACACCTATGGGTTTAAGAAGGTTGATCCAGATAGGTGGGAGTTTGCTAATGAGATGTTTTTGAGAGGACAGAGAATTCTTCTAAAGAACATTAGAAGGAGGAAATCAAATCAATCTCAAACAATGCAGCAAGGTGGTCTAGAGCCTTGTGTTGAGGTGGGGCGGTTTGGATTAGATGGAGGAGAAGTTGATCGGTTGAGGCGTGACAGACAAGTTCTGATGGTGGAATTGGTCAAACTTAGACAACAGCAACAGAATACAAGAGCTCACCTTCAAGCAATGGAAGGAAGGCTTAAAAAGACTGAACAGAAACAACAACAGATGATGAACTTCTTGGCAAAGGCAATGCAGAATCCCAACTTCCTTCAACAGTTAATGCACCAAAAGGAGTGGAGAAAGGAGCTTGAAGAAGCATTTTCCAATAAGAGAAGGAGACCTATTGATCAAGGTCAAGGGACTAGTAATAATGTTGAAGCTATTGGTGGTGGTGAATTAGCAGGATCACCACCTTTTGTTAAATTTGAACCACAGGAATACAGTGACAAATTATTAGAGTTTGAGATAACAGACCTGCAGCAAGATCTTGCCTTGAATAATAATATTGCTGTTGAAGAGGGACAAAGTAGTGCTCAAAACATATTGGAGGAAGATATTCCTATTCAACTTGGAAGTAGAGATCATAAAAACATTGATGAAGTGTTTTGGCAAGATTTGTTGAATGGGGGTATTGAAGATCAAGATATACTAGATGTTGAAGATGTAGATATATTGGCTGAGCAACTTGGTTATTTGGCCTCTAGTCCTAAATAG 1110 0.4108 MNRHGGGVKEEFLGESSSFYQHPSMMVSPQPQPIEGLHEGGPPPFLTKTYDIVDDPSTNHIVSWSTANNSFVVWDPQAFSIALLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQRILLKNIRRRKSNQSQTMQQGGLEPCVEVGRFGLDGGEVDRLRRDRQVLMVELVKLRQQQQNTRAHLQAMEGRLKKTEQKQQQMMNFLAKAMQNPNFLQQLMHQKEWRKELEEAFSNKRRRPIDQGQGTSNNVEAIGGGELAGSPPFVKFEPQEYSDKLLEFEITDLQQDLALNNNIAVEEGQSSAQNILEEDIPIQLGSRDHKNIDEVFWQDLLNGGIEDQDILDVEDVDILAEQLGYLASSPK. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07827 369 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g07827 369 Gene3D - 38 135 IPR036388 -
Seca7g07827 369 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g07827 369 Coils Coil 163 204 - -
Seca7g07827 369 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g07827 369 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g07827 369 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g07827 369 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g07827 369 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 256 IPR027725 -
Seca7g07827 369 FunFam Heat shock transcription factor 1 38 135 - -
Seca7g07827 369 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07827 Seca-Chr7 182582053 182584022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07827 31 367 HSF AT3G22830 56.787 2.95e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca7g07827 HSF_DNA-bind 2.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07827 K09419 - gmx:100809515 513.457