Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07792 ATGTTTCCTTTACAACGAGGCAATGAGCTGGCGATCTCGTTTTCTAATAGTGTCCACCACCGGCAGCACAAAATCTCCCAAGATCTGATTCTGGATGATTGTGATTCTCTCCTTCTCCATAAACAATTGGGTACTAGTAGCCGCCCAAAACAATTATTTTATGATCATGCTAATTCTTCTAACAACCAAGAATATGAAAAGAAGATGGTTCATAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTTCCCTTCATGCCTCCCTTAGATCCCTTCTCCCTCTTCACTTCATCAAGGGAAAGCGCTCTTTATCTGATCAAATGAATGAGGCAGTGAATTACATAAATCACCTGCACAAGAGTATCAAAGAATTGAGTGACAAGAGGGATGAACTGAAGAAACAACTCTCCAAAAACAAGCAAGCATCTTCTTCTTCTACCTGCAGTTTCACTTTCCACCACAATAATGGAGCTGTGGGAATTGAAATCAACAGTGGCTTCAGAGAGGAAAGGCTCCCACTTTCAAAATTGCTGGAACTAATTCTGTTAGAAGAAGGACTTGAAGTTGTCAGTTGCCTTTCAACTGAAGTCAATGGCAGATTACTCCACACTATCCACTGTGAGGTATGTATGGAGTCACTCCAATCAATGATTATATTCTCTAGCTTTATTTTATATATATATTAA 687 0.4003 MFPLQRGNELAISFSNSVHHRQHKISQDLILDDCDSLLLHKQLGTSSRPKQLFYDHANSSNNQEYEKKMVHREIERQRRQEMASLHASLRSLLPLHFIKGKRSLSDQMNEAVNYINHLHKSIKELSDKRDELKKQLSKNKQASSSSTCSFTFHHNNGAVGIEINSGFREERLPLSKLLELILLEEGLEVVSCLSTEVNGRLLHTIHCEVCMESLQSMIIFSSFILYIY. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07792 228 FunFam Transcription factor bHLH126 58 146 - -
Seca7g07792 228 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 60 217 - -
Seca7g07792 228 CDD bHLH_AtORG2_like 67 140 - -
Seca7g07792 228 Gene3D - 57 148 IPR036638 GO:0046983
Seca7g07792 228 Pfam Helix-loop-helix DNA-binding domain 67 119 IPR011598 GO:0046983
Seca7g07792 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 140 IPR036638 GO:0046983
Seca7g07792 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 118 IPR011598 GO:0046983
Seca7g07792 228 Coils Coil 115 142 - -
Seca7g07792 228 SMART finulus 72 124 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07792 Seca-Chr7 182096998 182098654 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07792 61 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25400 46.053 2.88e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g07792 HLH 5.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07792 - - gmx:100775836 229.565