Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07790 ATGCATAGGGAGACTGAAAAACAAAGAAGGCAAGAAATGTCCAGGCTTTGCACCTCCTTTAGATCCCTTCTTCCTTTTGAATATATTAAGGGAAAGCGTTCAACTTCTGATCACATGCATGAGGGTACAAAGTATATCAAACACCTTGAGAATAAGGTGAAGCAGTTACAAGCAAAGAAGGATGAGTTGATGAAGTTATCTAATTTGAGTATCCATCCTGAAACCCATGTCATTGTTCATCCTTGTTCGGGAGGAGGTGTTCAGATTAAGTGTAGTTATAGCTTCAGGAAACATGAATTTCCTTTGTCAAGAGTGTTAGATATAGTGCTCAAACAAGGGCTTAATGTCGTCAACTGTGTTTCCATCAAAACAGATGATCACAGATTCATACACACTATCCGATCAGAGGATCCACATTCAATGACCGAGATTAATTACAGTGAACTGCAAAGAAAGCTTATAGCAGCAATATCACCATCAAGTTTGGAGGAGACTGTACGTGTGAGTACCTGA 513 0.3938 MHRETEKQRRQEMSRLCTSFRSLLPFEYIKGKRSTSDHMHEGTKYIKHLENKVKQLQAKKDELMKLSNLSIHPETHVIVHPCSGGGVQIKCSYSFRKHEFPLSRVLDIVLKQGLNVVNCVSIKTDDHRFIHTIRSEDPHSMTEINYSELQRKLIAAISPSSLEETVRVST. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07790 170 Coils Coil 39 69 - -
Seca7g07790 170 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 154 - -
Seca7g07790 170 CDD bHLH_AtORG2_like 1 74 - -
Seca7g07790 170 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Seca7g07790 170 Pfam Helix-loop-helix DNA-binding domain 2 50 IPR011598 GO:0046983
Seca7g07790 170 Gene3D - 1 73 IPR036638 GO:0046983
Seca7g07790 170 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 66 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07790 Seca-Chr7 182057679 182058883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07790 1 154 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 40.828 3.61e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g07790 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07790 - - lja:Lj5g3v2030790.2 239.195