Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07764 ATGTATTCCGTCAATCATTTTTCCGACCCACAAACCTGTAATTCGGAGGTGTTTCTGGCGGCAAGCCACCCGAAAAAGCGTGCAGGGAGGAAGAAGTTCAGGGAGACGCGCCACCCAGTGTACCGCGGCGTGAGGAGGAGAGATTCCGGCAAGTGGGTGTGTGAGGTGCGAGAGCCCAACAAGAAGACTAGGATTTGGCTCGGGACATTCCCCACGCCGGAGATGGCGGCGCGTGCACATGACGTGGCAGCGATAGCGCTTAGGGGAAAATCCGCATGCCTCAACTTTGCGGATTCCGCATGGCGGTTGCCGGTTCCGGCCACGGCGGATGCAAGGGACATCCAGAAGGCGGCAGCGGAGGCGGCAGAGGCCTTCCGTCCGGTGACTGAGTCGGAGACAGATGAGGGGAGGAAGGATAATGAGTCTGCTTCGCCGGCGGCGCTGGCGACGGAGACGGTGACGGAGCAACAAGACGTTGAAGAAGAGGCGGTGCCGGAATTCCTGAGAAACATGGTGCTCATGTCGCCAACACATTGCTGGGGAAGTGAGTATGGAACTGCTGACGTGGAATTTGATGATGCTGAAGTTTCATTGTGGAGTTATTCAATTTAA 612 0.5703 MYSVNHFSDPQTCNSEVFLAASHPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAIALRGKSACLNFADSAWRLPVPATADARDIQKAAAEAAEAFRPVTESETDEGRKDNESASPAALATETVTEQQDVEEEAVPEFLRNMVLMSPTHCWGSEYGTADVEFDDAEVSLWSYSI. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07764 203 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Seca7g07764 203 MobiDBLite consensus disorder prediction 124 160 - -
Seca7g07764 203 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 201 IPR045277 GO:0003700
Seca7g07764 203 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Seca7g07764 203 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Seca7g07764 203 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Seca7g07764 203 SUPERFAMILY DNA-binding domain 40 99 IPR016177 GO:0003677
Seca7g07764 203 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Seca7g07764 203 MobiDBLite consensus disorder prediction 127 141 - -
Seca7g07764 203 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Seca7g07764 203 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Seca7g07764 203 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07764 Seca-Chr7 181804283 181804894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07764 19 201 AP2-EREBP Transcription Factor Family AT4G25470 59.896 3.47e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g07764 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07764 - - lja:Lj5g3v2028390.1 306.219