Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07759 ATGGAAGATGAGAGAGATGCTGATGCTGCAATTCGTGCTCTTGATCGGGTAGAATTTGGTCGGAAGGGACGCAGACTTCGTGTGGAATGGACAAAGCAAGAACGTGGCATCAGAAGGCCTGCTGCTTCAAGAAGATCTACAGCTAATGGGAGACCATCAAAAACATTATTTGTAATTAATTTTGATACATATCATACTAGAACAAGGGATTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCCGAAGGAACTTTGCTTTTGTTCAATATGAATCGGAGGATGATGCTTGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTAATGGATCGGGTTATTTCAGTTGAATTTGCTGTTAAAGATGATGATGATAGGCGAAATGGATACAGCCCGAAGAGAGGCCATGATCGTCAACGCGATAGAAGCCGCGACGGGAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGACCCAGTCCATATAAGAGGGAGAGGGGCAGCCCTGACTATGGCCGTGGCCGCAGCCGTAGCAGAAGCCCCCATCGGAGAGAGCGAGCTAGCCCTGCATATGGGCGTAGAAGCCCTAGTCCATATGCAAGAGAGAGGAATGGTTCTGACCCTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCGGTCTCACTCCCATAGTCCTGAAGAAAGAGAGAGGACAAGCCCTCAAAATGGTGGTGGCTCTAGCCGTAGTCCTTATGATACTGTAAAAACTAGCCCTGAAAATGGCCATGACTCCAGACATAGTCCTGAAGCAAAAGGAAACCCCAGCCCTTACAATGGTTATGAAGATGGAGGTAGCCCAAATACTATGCCTGAGCCCAGGGATAGTCCCAACTATGGTGGTCCTGAAAGTCCTATGCATGAACGATACCGCAGCCAGTCACCCCCTGCTGAAGAATGA 990 0.4879 MEDERDADAAIRALDRVEFGRKGRRLRVEWTKQERGIRRPAASRRSTANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDACRALEATNMSKLMDRVISVEFAVKDDDDRRNGYSPKRGHDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERGSPDYGRGRSRSRSPHRRERASPAYGRRSPSPYARERNGSDPVRDSSRSPYHKERGRTDRSHSHSPEERERTSPQNGGGSSRSPYDTVKTSPENGHDSRHSPEAKGNPSPYNGYEDGGSPNTMPEPRDSPNYGGPESPMHERYRSQSPPAEE. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07759 329 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 324 - -
Seca7g07759 329 MobiDBLite consensus disorder prediction 127 187 - -
Seca7g07759 329 SUPERFAMILY RNA-binding domain, RBD 40 131 IPR035979 GO:0003676
Seca7g07759 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 125 IPR000504 GO:0003723
Seca7g07759 329 MobiDBLite consensus disorder prediction 215 248 - -
Seca7g07759 329 FunFam Serine/arginine-rich splicing factor RS31 46 136 - -
Seca7g07759 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 118 IPR000504 GO:0003723
Seca7g07759 329 Gene3D - 41 138 IPR012677 -
Seca7g07759 329 MobiDBLite consensus disorder prediction 127 329 - -
Seca7g07759 329 MobiDBLite consensus disorder prediction 249 268 - -
Seca7g07759 329 SMART rrm1_1 55 121 IPR000504 GO:0003723
Seca7g07759 329 SUPERFAMILY RNA-binding domain, RBD 1 47 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07759 Seca-Chr7 181743624 181747149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07759 22 127 Eukaryotic Initiation Factors Gene Family AT3G16380 31.858 9.39e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07759 K12893 - gmx:100796509 520.005