Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07741 ATGGCTCCGCCGGTGGAACACAACGGCGACTCCTCGGCCGGCGAGTCTCAAAGATCCACTCCGACGCCGTTTCTCACCAAGACCTACCAGCTCGTCGATGACCACACCATCGATGACGTTATTTCCTGGAACGATGCTGGATCATCCTTCATCGTCTGGAACCCTACCGTTTTCGCCAGGGATTTGCTTCCAAAATATTTCAAACACAACAATTTCTCTAGCTTTGTTCGCCAACTCAACACTTATGTAGGATTCAGAAAAGTCGTACCTGATCGGTGGGAATTCTCAAACGAGTGTTTCCGAAAAGGCGAGAAACGGCTTCTCTGTGAGATTCAGCGGCGTAAGATCCTTTCACAATCGCCTCCGGCAGTTTCGAATGCTACCGGAGCGGTTCCCTTGCCGTTGCCGCTTGCTGCGATTCCGACGGCGAAACCGATCGTGTCGCCGTCGAACTCAGGGGAGGAGCAGGTGATTTCGTCGAACTCGTCGCCGTCGAGAGCGCCGACGGAGCTGTTGGATGAGAACGAGAGGCTGAAGAGGGAGAACTTTCAGTTGACGAAGGAATTGGCGGAGATGAGATCGCTCTGCAACAGTATACTCAATCTCATGTCGAGTTACACGAACGCTCAACCGGACGGCGATGCACAAGGTAGGAAGTGTGGTTCCATGGCGACGAAGACTCTTCATTTGATGCCGGCGAAGCGGTGCTCCGCCGAGGAAGCAGCGGCAATGGTGGTGGAAGAGATGAACCCGAAACTGTTTGGGGTGGCGATTGGCACGAAGCGAGCGAGAGAGGAAAGGCGGGGAGCCGAAGATGACACAGTGTTGAGCCTGCATCAACCGGTTCATGCAGACGTGAAATCAGAGCCGTTTGTTTGTTTGGGCGGCGAAAATAGGAAAACACTGTGGCCTGTGGATCAATGA 924 0.5368 MAPPVEHNGDSSAGESQRSTPTPFLTKTYQLVDDHTIDDVISWNDAGSSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYVGFRKVVPDRWEFSNECFRKGEKRLLCEIQRRKILSQSPPAVSNATGAVPLPLPLAAIPTAKPIVSPSNSGEEQVISSNSSPSRAPTELLDENERLKRENFQLTKELAEMRSLCNSILNLMSSYTNAQPDGDAQGRKCGSMATKTLHLMPAKRCSAEEAAAMVVEEMNPKLFGVAIGTKRAREERRGAEDDTVLSLHQPVHADVKSEPFVCLGGENRKTLWPVDQ. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07741 307 SMART hsfneu3 20 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g07741 307 MobiDBLite consensus disorder prediction 146 171 - -
Seca7g07741 307 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g07741 307 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g07741 307 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g07741 307 MobiDBLite consensus disorder prediction 1 22 - -
Seca7g07741 307 Gene3D - 16 115 IPR036388 -
Seca7g07741 307 Coils Coil 175 195 - -
Seca7g07741 307 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 227 IPR027725 -
Seca7g07741 307 MobiDBLite consensus disorder prediction 146 169 - -
Seca7g07741 307 Pfam HSF-type DNA-binding 24 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca7g07741 307 FunFam Heat stress transcription factor B-4 16 115 - -
Seca7g07741 307 SUPERFAMILY "Winged helix" DNA-binding domain 20 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07741 Seca-Chr7 181460667 181462023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07741 2 266 HSF AT5G62020 52.113 6.60e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca7g07741 HSF_DNA-bind 4.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07741 K09419 - gmx:100780987 412.535