Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07736 ATGCAGCCAGCATCTCCTTTTGCCAACCACACCATTTGGGACGTCTCTTCCATAGTCATCATCATTGGAGCCTTCATTGCAACTTTCCTCTTGGTAACCGTCTTCTCAATTTTCCTCAGTCACTGTGGCCACTCACACCCCACCTCTTCTCAGAATCACAGTGGCATCCACCCTCAAATCCTCCAAACCTTCCCCATCCTCTTCTACTCTTCCATCAACAACCACCTCAAACGAGAAGACCCTCTTCAATGCGCCGTGTGTCTCTCCGATTTTAACCACCAAGACACCCTCCGTCTCCTCCCTCAATGCAACCATGTCTTCCACCCTCCTTGCATCGATGCCTGGCTTTCTTCCCATGTCACCTGCCCTGTTTGTCGCGCCATTCTCGACCAACCCCTGCATTCTGTTGCCATTGCTGTTGACGGTGAAGGTTCTACTAGTGAAGGTTGCGGTGAAGGGCGGAGGAACGGTGATGAAGAGGATAAAGGGGTGGTGGAACGTGCGTCAAAATCGAAGCTTTTGAGGTCGAATTCGACGGGTCATTCGGTGGTGGAAGATGTGGAGAGGTATACGCTGAGGTTGCCGGAGGATGTGAAGAAGAGTATTATGGTGAACCATGGGGTGATGTTGCAGCGTTCGGCTAGCTACAACTTTGTTGGGAGCTCTATGAAAGGGTTGTGTTGGAGTGACAGTGATGGGAGTAGCAGAGGTAAGAGGCACAGCATTGGGTTGATGGTAAAAAATCTCAAGTGA 753 0.506 MQPASPFANHTIWDVSSIVIIIGAFIATFLLVTVFSIFLSHCGHSHPTSSQNHSGIHPQILQTFPILFYSSINNHLKREDPLQCAVCLSDFNHQDTLRLLPQCNHVFHPPCIDAWLSSHVTCPVCRAILDQPLHSVAIAVDGEGSTSEGCGEGRRNGDEEDKGVVERASKSKLLRSNSTGHSVVEDVERYTLRLPEDVKKSIMVNHGVMLQRSASYNFVGSSMKGLCWSDSDGSSRGKRHSIGLMVKNLK. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07736 250 SMART ring_2 84 125 IPR001841 -
Seca7g07736 250 Pfam Ring finger domain 83 126 IPR001841 -
Seca7g07736 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 130 IPR013083 -
Seca7g07736 250 SUPERFAMILY RING/U-box 75 132 - -
Seca7g07736 250 ProSiteProfiles Zinc finger RING-type profile. 84 126 IPR001841 -
Seca7g07736 250 FunFam E3 ubiquitin-protein ligase ATL6 44 132 - -
Seca7g07736 250 CDD RING-H2_EL5-like 83 126 - -
Seca7g07736 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 206 - -
Seca7g07736 250 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07736 Seca-Chr7 181430921 181431673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07736 17 203 Rapid Response to Elicitors AT3G05200 35.747 1.57e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07736 K10664 - gmx:100809056 180.644