Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07714 ATGGTTAGCCAAAGGCAGCGACTTGCTCGGAAGCGATACAAAGCAGAACACCCTGAATTGTTCCCCAAACCAGAGCCTACTCCCCCAAAAGACCCTGACAGTAAGAAAAATAAGAAGAAAAAGGCAGACTCAAAAGATCAACGAATTAAAAGCAATTTCAGAAAACACCCTCTTCGAGTTCCCGGTATGAAGCCTGGCGAGAGCTGTTTCATCTGCAAGTCCAAAGAGCATATTGCCAAGTTGTGTCCCCAAAAAGCCGAATGGGAAAAAAACAAGATATGTTTGCGGTGTCGACGACGTGGTCATAGAGCTCAGAATTGCCCTGAGGTTCATGTTGGGTCCAAGGATGTGAAATATTGCTATAATTGTGGGGAAACTGGGCACTCACTTTCAAATTGTCCGCAGCCTCTCCAAGAAGGAGGGACAAAGTTTGCTGAATGCTTTGTATGTAAACAACGTGGACACTTGAGCAAAAACTGCCCTCAAAATGCTCATGGAATTTATCCAAAGGGTGGTTGTTGTAAAATATGTGGTGGCGTGACACATTTGGCAAAGGATTGTCCTGACAAAGGGAAGAAAGGATCTGCAGCTGCTCATGGGGCTTTCGGTGGATCAATGAGAACTGAAGTGAGGCCCAGTGGTCAGGTTACCAAATTTGTGAGCGGGGATGATATGGAGGATGACTTCATGACAGATGACATATATAGTGGTGACAAGAACGACAAGAACAAGTCTTCAAAGTCAAAAGATGGCCATAGCGAGTTATTGAACGGGAAGAAGAGATGCAGAGAGGAGATACCTGAACCAGTGGCTTCTCCGGAACAGGAACAGCGTAGCAAGAGGAAGAGGAGAAAGAAGAAGAAAAACAAGGCAAAGGAGGAAGAAGAACCAAACGAACACCCTCAGCCTCAGGTATGCCCTAAACCCTTAGTAGCCACACCAATCCCAATAAACCCTGAACCCAAGATTAACGATGAAAAAGGGCAGGTGGAGAACCCAAAGAATCTATCGCTTATGCAGAGGACCCTCAACCTTGCCCAGAACAAACCCGACTCACCAAACCCATTATGCCCTAAACCATCATCTCCAATAGACCAAACAATCCCGGTAGACCCAGCGCCCTCAATTTGCCCTGAACCAGTAGAGCCTGTTAGCCAAACAATCCCAGTAGATACAGCAAAACTAGTAGACACAGAACAGGAGACGAAGAAGCAAGATGGGAAGAAGGGGAATATTGTGTTAGATGGGGCTGGACCTAATGAACACAATATGGAATCGTCTGAAACCCCGATTCAGACATCTATATGCCATACAGCAGCACCCCTGGTAGGCCCTACAGTCCCAGTGGACCCTCATCCCACAGTCCCAACAGACCAAGGCATTCTAGTAGTTCTGGAACACAAGGCTTCAAAGAAAAAGAAGAGGAAAAGGAAGAGTGACTTCAAAAGTGATGGGGAAAAACCTAATGAGCGCAATATGGAACTGATTGAAGCCCCGACTGACACATCTATATGCCATACAGCAGCACCCCCAGTAGACCCTCATCCTGCTATTCCAACAGCTGGAGCAATCTCGACAGATCCGGAGCACAAGACCTCCAAGAAAAAGAAGAGGAAGAAGAAAAAGAAGAGTGACCTCAAAAGTGAAGGAGAAAAACCCAATGAACACAATGGAAAGCCACCTGAAACCCCAGTTCAGAGATCTACATACCCTAAAGCAGCACCCTCAATAGAACCAGCAACTCTAAAAGTTGCAAAACAGCAGATGACAAAGAAGAAAAAGAAGAGTGCACTCAAAATCCAAGGGGCAAAATCCGACCAAGATGATACTGATCTAGCTGCTGAAACCCAAATTCGGAGAAGTAGACAAGTCCCGGTCCCTAAAGCTTATTATGGAAGTTCTATGGTATGTAACTGGATTCATGGATTTAGTTTCAGTAGTTGTTTTCTATGTTGCTCTAGCATTAACTAA 1971 0.4541 MVSQRQRLARKRYKAEHPELFPKPEPTPPKDPDSKKNKKKKADSKDQRIKSNFRKHPLRVPGMKPGESCFICKSKEHIAKLCPQKAEWEKNKICLRCRRRGHRAQNCPEVHVGSKDVKYCYNCGETGHSLSNCPQPLQEGGTKFAECFVCKQRGHLSKNCPQNAHGIYPKGGCCKICGGVTHLAKDCPDKGKKGSAAAHGAFGGSMRTEVRPSGQVTKFVSGDDMEDDFMTDDIYSGDKNDKNKSSKSKDGHSELLNGKKRCREEIPEPVASPEQEQRSKRKRRKKKKNKAKEEEEPNEHPQPQVCPKPLVATPIPINPEPKINDEKGQVENPKNLSLMQRTLNLAQNKPDSPNPLCPKPSSPIDQTIPVDPAPSICPEPVEPVSQTIPVDTAKLVDTEQETKKQDGKKGNIVLDGAGPNEHNMESSETPIQTSICHTAAPLVGPTVPVDPHPTVPTDQGILVVLEHKASKKKKRKRKSDFKSDGEKPNERNMELIEAPTDTSICHTAAPPVDPHPAIPTAGAISTDPEHKTSKKKKRKKKKKSDLKSEGEKPNEHNGKPPETPVQRSTYPKAAPSIEPATLKVAKQQMTKKKKKSALKIQGAKSDQDDTDLAAETQIRRSRQVPVPKAYYGSSMVCNWIHGFSFSSCFLCCSSIN. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07714 656 Pfam Zinc knuckle 119 135 IPR001878 GO:0003676|GO:0008270
Seca7g07714 656 Pfam Zinc knuckle 147 162 IPR001878 GO:0003676|GO:0008270
Seca7g07714 656 MobiDBLite consensus disorder prediction 544 558 - -
Seca7g07714 656 SMART c2hcfinal6 173 189 IPR001878 GO:0003676|GO:0008270
Seca7g07714 656 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Seca7g07714 656 SMART c2hcfinal6 68 84 IPR001878 GO:0003676|GO:0008270
Seca7g07714 656 SMART c2hcfinal6 93 109 IPR001878 GO:0003676|GO:0008270
Seca7g07714 656 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Seca7g07714 656 MobiDBLite consensus disorder prediction 396 410 - -
Seca7g07714 656 MobiDBLite consensus disorder prediction 218 614 - -
Seca7g07714 656 SUPERFAMILY Retrovirus zinc finger-like domains 62 111 IPR036875 GO:0003676|GO:0008270
Seca7g07714 656 Coils Coil 276 296 - -
Seca7g07714 656 MobiDBLite consensus disorder prediction 1 58 - -
Seca7g07714 656 ProSiteProfiles Zinc finger CCHC-type profile. 147 162 IPR001878 GO:0003676|GO:0008270
Seca7g07714 656 PANTHER OS04G0555800 PROTEIN 1 249 - -
Seca7g07714 656 MobiDBLite consensus disorder prediction 479 494 - -
Seca7g07714 656 ProSiteProfiles Zinc finger CCHC-type profile. 120 135 IPR001878 GO:0003676|GO:0008270
Seca7g07714 656 MobiDBLite consensus disorder prediction 232 278 - -
Seca7g07714 656 MobiDBLite consensus disorder prediction 353 379 - -
Seca7g07714 656 SUPERFAMILY Retrovirus zinc finger-like domains 114 163 IPR036875 GO:0003676|GO:0008270
Seca7g07714 656 Gene3D - 62 116 - -
Seca7g07714 656 MobiDBLite consensus disorder prediction 599 614 - -
Seca7g07714 656 MobiDBLite consensus disorder prediction 12 53 - -
Seca7g07714 656 MobiDBLite consensus disorder prediction 302 316 - -
Seca7g07714 656 FunFam Zinc finger CCHC-type-containing 9 144 197 - -
Seca7g07714 656 MobiDBLite consensus disorder prediction 422 436 - -
Seca7g07714 656 ProSiteProfiles Zinc finger CCHC-type profile. 94 109 IPR001878 GO:0003676|GO:0008270
Seca7g07714 656 Gene3D - 117 167 - -
Seca7g07714 656 MobiDBLite consensus disorder prediction 330 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07714 Seca-Chr7 181257738 181265217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07714 93 190 C2H2 Transcription Factor Family AT5G20220 26.957 4.56e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07714 - - aip:107616096 367.851