Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07665 ATGGTGTCAAAAAACCCGAACCCTTCAGAAGCTCTGTACTTGGATCCCAATGGCATGGCTCTGGCTGGCCTAGTTCCCTTCACTGATTCTATGGAGGACCTAACCAAGAAGACCCGCAAGCCGTACACTATCACCAAGTCTAGGGAGAGCTGGACTGAACCCGAGCATGACAAGTTCCTTGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAAACAGTTATTCAGATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAACGAAAAGCTGCTCATCCATATCCTCAGAAAGCATCCAAAAATGGTTACAATCTTCACCATATTCATGATTCTTCATCAATGCTTAAAACTCCTATTACTAACACTGCAGTGTCTTCCTGGTCAAACAACACTTTGCAGAAAACAGCCAATGTATTGCAAGGACAAAAGGTGAATAATTGTTGCAGTAGCAGTGAAAGCACTCCTAGACCACAGCTGGTTCGTGAATCTAATGTTCTTCCGGATTTTACTCAAGTATACCGCTTCATTGGCAGTGTATTTGACCCAAATGTAACTGGACATCTCCAGGAACTAAAAAGGATGGACCCTATAGATGTTGAGACGGTGCTACTGTTGATGAGAAACCTGTCTATCAATTTAACAAGCCCAGATTTTGAGGATCATGTAAGTATTCATGTCACTGATCTTTGTATTACTGTAAATATATAA 780 0.4167 MVSKNPNPSEALYLDPNGMALAGLVPFTDSMEDLTKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNGYNLHHIHDSSSMLKTPITNTAVSSWSNNTLQKTANVLQGQKVNNCCSSSESTPRPQLVRESNVLPDFTQVYRFIGSVFDPNVTGHLQELKRMDPIDVETVLLLMRNLSINLTSPDFEDHVSIHVTDLCITVNI. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07665 259 PANTHER SWI/SNF COMPLEX-RELATED 31 238 - -
Seca7g07665 259 MobiDBLite consensus disorder prediction 98 127 - -
Seca7g07665 259 SMART sant 47 95 IPR001005 -
Seca7g07665 259 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 95 IPR006447 GO:0003677
Seca7g07665 259 ProSiteProfiles SANT domain profile. 46 97 IPR017884 -
Seca7g07665 259 ProSiteProfiles Myb-like domain profile. 43 93 IPR001005 -
Seca7g07665 259 CDD SANT 50 93 IPR001005 -
Seca7g07665 259 Gene3D - 51 98 - -
Seca7g07665 259 FunFam protein REVEILLE 6 isoform X1 50 98 - -
Seca7g07665 259 Pfam Myb-like DNA-binding domain 48 93 IPR001005 -
Seca7g07665 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 97 IPR017930 -
Seca7g07665 259 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07665 Seca-Chr7 180688617 180693940 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca7g07665 Myb_DNA-binding 2.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07665 - - gmx:778166 385.956