Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07626 ATGGAATGGCAGATCTTGTTAGCTACAGGAATGCCGACCGTGACATCGAGCAGTTCCTGTGGTCTACCATGTTACCTTTTCCTTCTGCAGGCATTGATTGCTTTGAAAAAGGGTGCTCAGCTGCTTAAATATGGTCGTAAGGGAAAACCTAAGTTTTGTTCGTTTAGACTTTCCAATGATGAGTTGTCTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGTTTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGATATCTGCGTCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTATAACCACGGGAAGCGATCTCTTGACTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTCAAGGCATTGATATCTTCTGGTCAAGGTGGGCGGTCAAAAATTGATGGATGGAGTGATGGAGGCCTATATCTTGATGTAAAAAACCTACTTGTTGTCTTTGTAATTTATCTCATTTTACTTGTACTATGTTTCTTCTACTTTGATGATAGTAGAGACTTGACATCAAGTAGTCCTAGTGAAAGTTCAGTTCGTGTTTCACAGGACATCAGTTCTCCTGACATTTCTGTTAGTGTGCCAAATACTTCTCCAAAGTCCTTTCAGCCTGAGAATACCTTAAATTTTGAACGGTCACATGCTCCATCAAACCCATCAAATATGCAAGTGAAAGGATCTGGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCCAGTCATGGGTCTGCACCGGATGATTATGATGCTCTTGGTGATGTGTACATTTGGGGGGAGGTCATCTGTGAGAATGTTGTGAAAGTTGGTGCTGAGAAAAATGTCAGTTATCTCAGCCCAAGGGCAGATATTCTTCTCCCCAGGCCACTGGAGTCCAATGTGGTCTTAGATGTACTTCAAATAGCATGCGGTGTAAAACATGCTGCTCTAGTTACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAATCTGGTGGCCGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAGGCACTGGCTTCTACAACCGTTGATTTTGTTGCCTGTGGGGAGTTTCATACATGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGTACAGATGTTAGTCACTGGATACCAAAGCGAATTGCAGGTCCACTAGAGGGGCTTCAAGTCGCTTTAGTCACCTGTGGTCCATGGCACACAGCTTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGTGATGGAACATTTGGTGTCCTAGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTATCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTCGTAGAGGTTATTGTAACACAATCCAGTGCAAGTGTGTCATCAGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAATCGCCTTGGACATGGAGACAAAGAGGCCCGGCTCGAACCAACTTGCGTACCTTCACTTATTGATTACAATTTTCATAGAATTGCTTGCGGGCACAGTTTGACAGTAGGCCTGACAACGTCTGGACATGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGAAATCCCCAGTCTGACGGAAAGGTGCCCTGTTTGGTTGAAGACAAGCTTGCTGGAGAATCTGTTGAAGAAATTGCATGTGGAGCTTATCATGTTGCTGTTTTAACATCCAAAAATGAAGTTTATACGTGGGGGAAGGGTGCAAATGGGCGATTGGGTCATGGAGATGTTGAAGATAGGAAAACACCTACTTTGGTTGAAGCCTTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGCAATCTGGTGCTGAGCAGTCTCAATGCTCTGCTTGTAGACAGGCATTTGGCTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCATTGTCATTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCTCTGGCCCCAAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTTTGCAAAATTGAATAAGGTTACAGAATCTGGCAATAATAATCGGAGGAATGCTATGCCTCGTTTGTCTGGTGAAAACAAGGACAGATTAGAAAAGTCTGAGCTAAGATTGTCGAAGTCAGCAGTGCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCGCCTCACAAGCGCCGTCTTTGCTACAGCTGAAAGATGTTGTCTTGTCTACTGCTATTGATCTGAAACGCACAGTTCCTAGACCTGTTCTTACACAATCTGGAGTGAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCGAGTCCCCCTCGTTCTGCTACACCTATTCCAACAACATCAGGACTTTCCTTCTCAAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTATTGAACCAAGAAGTGCTGAAGTTACGTGCTCAGGTTGAGACCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTCAGGAAGCTATGGCACTGGCTGCTGAGGAATCTACCAAATCTAAGGCTGCAAAAGAAGTTATTAAGTCACTTACAGCACAGCTCAAAGATCTAGCTGAGAGGCTTCCTCCTGGTGTTTATGATGCTGAGAACATCAGACCAGTGTACCTGCCAAATGGTCTGGAGTCAAATGGCATCCACTATCCAGACTTAAACGGGGAGCGTCACACCAGGGCTGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATAGGACTTGAATCTTCTCTGATGAATAGAACAGAGGGGAATTTCCCTGGAAGCTATGGAACTAGTCTTTACCAGCAGAGCCGGGGGCTTGTGGCCTCTAATGGGACAGATGATTACCCAGATGCTAAATTGCCAAATGGAAGTGGTGTGATTCAGGCAAGCAGCAACAGTGTGTCAGATACTGTTGAGGGTAGGGATTCTGGGCATTTCCAAGATGATGAGAGTGATATGAGATCGAGGAATGCTGCATTGCCTGCTAATAGTAATCAAATTGAAGCAGAATGGATCGAACAGTACGAACCTGGTGTCTATATAACACTTGTTGCCCTGCGAGATGGAACGAGAGATCTAAAGAGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCACCAAGCAGAGACATGGTGGTCAGAGAACCGCGAGAAGGTATATGAAAGGTACAATGTTCGGAGCACAGACAAGTCTTCAAACCAAGCAGCACGTAGGGCAGAGGGTGCTGGTTCACCTGTTCTATAA 3471 0.4428 MEWQILLATGMPTVTSSSSCGLPCYLFLLQALIALKKGAQLLKYGRKGKPKFCSFRLSNDELSLIWISSSGERSLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNHGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDVKNLLVVFVIYLILLVLCFFYFDDSRDLTSSSPSESSVRVSQDISSPDISVSVPNTSPKSFQPENTLNFERSHAPSNPSNMQVKGSGSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGAEKNVSYLSPRADILLPRPLESNVVLDVLQIACGVKHAALVTRQGEIFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKVPCLVEDKLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWQSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFAKLNKVTESGNNNRRNAMPRLSGENKDRLEKSELRLSKSAVPSNMDLIKQLDSKAAKQGKKADTFSLVRASQAPSLLQLKDVVLSTAIDLKRTVPRPVLTQSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRAQVETLRQRCELQELELQRSAKKTQEAMALAAEESTKSKAAKEVIKSLTAQLKDLAERLPPGVYDAENIRPVYLPNGLESNGIHYPDLNGERHTRAESISGSSLASIGLESSLMNRTEGNFPGSYGTSLYQQSRGLVASNGTDDYPDAKLPNGSGVIQASSNSVSDTVEGRDSGHFQDDESDMRSRNAALPANSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSTDKSSNQAARRAEGAGSPVL. 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07626 1156 CDD PH_PLC_plant-like 28 138 - -
Seca7g07626 1156 MobiDBLite consensus disorder prediction 733 752 - -
Seca7g07626 1156 MobiDBLite consensus disorder prediction 822 839 - -
Seca7g07626 1156 Pfam Pleckstrin homology domain 33 137 IPR001849 -
Seca7g07626 1156 MobiDBLite consensus disorder prediction 207 244 - -
Seca7g07626 1156 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Seca7g07626 1156 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 386 IPR000408 -
Seca7g07626 1156 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 505 556 IPR000408 -
Seca7g07626 1156 PRINTS Chromosome condensation regulator RCC1 signature 444 458 IPR000408 -
Seca7g07626 1156 PRINTS Chromosome condensation regulator RCC1 signature 318 331 IPR000408 -
Seca7g07626 1156 PRINTS Chromosome condensation regulator RCC1 signature 604 625 IPR000408 -
Seca7g07626 1156 PRINTS Chromosome condensation regulator RCC1 signature 387 403 IPR000408 -
Seca7g07626 1156 PRINTS Chromosome condensation regulator RCC1 signature 428 444 IPR000408 -
Seca7g07626 1156 PRINTS Chromosome condensation regulator RCC1 signature 546 564 IPR000408 -
Seca7g07626 1156 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Seca7g07626 1156 FunFam PH, RCC1 and FYVE domains-containing protein 1 495 666 - -
Seca7g07626 1156 Coils Coil 861 902 - -
Seca7g07626 1156 Pfam FYVE zinc finger 661 727 IPR000306 GO:0046872
Seca7g07626 1156 MobiDBLite consensus disorder prediction 1033 1049 - -
Seca7g07626 1156 Pfam Regulator of chromosome condensation (RCC1) repeat 387 438 IPR000408 -
Seca7g07626 1156 Pfam Regulator of chromosome condensation (RCC1) repeat 442 490 IPR000408 -
Seca7g07626 1156 Pfam Regulator of chromosome condensation (RCC1) repeat 610 657 IPR000408 -
Seca7g07626 1156 Pfam Regulator of chromosome condensation (RCC1) repeat 335 383 IPR000408 -
Seca7g07626 1156 Pfam Regulator of chromosome condensation (RCC1) repeat 556 605 IPR000408 -
Seca7g07626 1156 Pfam Regulator of chromosome condensation (RCC1) repeat 504 551 IPR000408 -
Seca7g07626 1156 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 273 334 IPR000408 -
Seca7g07626 1156 MobiDBLite consensus disorder prediction 1050 1064 - -
Seca7g07626 1156 Pfam Transcription factor BRX N-terminal domain 912 947 IPR027988 -
Seca7g07626 1156 ProSiteProfiles BRX domain profile. 1078 1133 IPR013591 -
Seca7g07626 1156 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 442 493 IPR000408 -
Seca7g07626 1156 MobiDBLite consensus disorder prediction 822 852 - -
Seca7g07626 1156 Pfam Transcription factor regulating root and shoot growth via Pin3 1077 1132 IPR013591 -
Seca7g07626 1156 MobiDBLite consensus disorder prediction 1135 1156 - -
Seca7g07626 1156 Gene3D - 498 672 IPR009091 -
Seca7g07626 1156 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 665 727 IPR017455 -
Seca7g07626 1156 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 321 331 IPR000408 -
Seca7g07626 1156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 733 IPR013083 -
Seca7g07626 1156 SUPERFAMILY PH domain-like 28 137 - -
Seca7g07626 1156 FunFam PH, RCC1 and FYVE domains-containing protein 1 244 494 - -
Seca7g07626 1156 SUPERFAMILY RCC1/BLIP-II 272 662 IPR009091 -
Seca7g07626 1156 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 72 932 - -
Seca7g07626 1156 SMART fyve_4 659 728 IPR000306 GO:0046872
Seca7g07626 1156 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 387 441 IPR000408 -
Seca7g07626 1156 SUPERFAMILY FYVE/PHD zinc finger 661 735 IPR011011 -
Seca7g07626 1156 Gene3D - 220 497 IPR009091 -
Seca7g07626 1156 FunFam Putative E3 ubiquitin-protein ligase HERC1 667 735 - -
Seca7g07626 1156 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 557 608 IPR000408 -
Seca7g07626 1156 Coils Coil 917 937 - -
Seca7g07626 1156 MobiDBLite consensus disorder prediction 1016 1065 - -
Seca7g07626 1156 Gene3D - 29 143 IPR011993 -
Seca7g07626 1156 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 609 660 IPR000408 -
Seca7g07626 1156 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 480 490 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07626 Seca-Chr7 180194689 180203574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07626 1079 1149 Major Intrinsic Protein MIP AT1G31880 46.479 2.00e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07626 - - gmx:100783270 1948.71