Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g07606 | ATGGGGAGGAAGAAGCCGACAGCACGGGACGAAGAGAATCCCTCGCAGCAAGGTGGTGGGAAATCGAAGAAGAAAGCTCTCGTCATCGACGATGATGAGTACTCTGTCGGAACCGAGCTCTCGGAGGAGCCTCCCCCTGCACCGGAAGAGAAGCCTGCTGGGAAGAAGAAAGGTAAAAAAGGTAACGCTAAAGCTGCGCAAGCTAGAGATAATGATGATGATGATGATGTTGATGACGATGAGGATGTCCCTGAGGTTGTGTTTGCTGGGAAAAAGAAGGGGAAATCGAAGAAGGGTGGTGCGTTCACTGGGTCTAGCTTTGGTTTGCTTGGTGATGGTGACGATGATGAAGAGAAATCGGGGTTAACCGGTGAACGAGATGACGAGGATGAGGATGAACCGGTGGTTAGTTTTTCAGGTAAAAAGAAGTCTTCAAAGGGTTCGAAGAAAGGCGGTGGTAGTTTGTTCACTGCTTCAGCTTTTGATGCTATTGATGATGATAACGATAACGATGGTGTGGAGGAGGATGAACCTGTGGTTAGTTTTTCAGGTAAGAAGAAGCCCTCAAAGGGTTCGAAGAAAGGCGGTGGTAGTTTGTTCAATGCCTCGGCTTTTGATGCTATTGATGATGATAATGATGATGAGGATGGCAAAGACGAGAATGATGATGTTGATGAACCTGTTATTGCTTTTACAGGGAAGAAGAAGTCTTCCAAAGGAAGCAAGAAGGGTGGTTCTTTGTTTTCAGCTGCTAGTTTTGATGAGGATAGTGTTTCTGTACCTGAGTCTGCTAAAGGTGGTGATGGCAAGGATGAGGATGACGATTCTATAGTTGCGTTTTCAGGTAAAAAGAAGTCTTCCAAAAAGAAAAGCAGTAGTACTGCTGCCAAAGTGAGGGATGAAAGTGTAGACATTGTTGAGCCTGAGCAGCCTAGTGTTGGAATTAGTAATACTGATGCTGACAACAGCAACGTTAATAAGAGTGAAGAGATAACTGAAACTTCCAAAAATAAGAAGAAGAATAAGAAGAAGAGTGGAAGAACTGCCCAAGAGGAGGAAGATTTAGATAAGATTCTTGCAGAGCTTGGTGAGGGCCCTTCTGTAGCAAAACCTGCTGCTCCTCTACCGCAGGATGATAAAGTTCAGCCTACTCCGGAAGTAGGTTCTGCTGCTGATGCTTCAGGGGAAAAGGAGGGAGAAGAGGAGACTGTAGAGTCAGCTGCTGCAAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAAAAGGCAGCTGCAGCTGCAGCAGCAGCAACAGCAGCTGGGGGTGCACCAGAAAATGAAACCGTAGAAGTTAAAGCTGAGACAATTGAATCAAAGAAGAATGAGTCAAAGACTAAAGCAGCTGACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTGGCTAGAAGAAAAGAGGCTGAAGAAAGGAAGAAAAGAGAAGAGGAGGAGAAGTTAAGGAAGGAAGAAGAGGAGCGACGTAGGCAAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAGACGCAGAAAGAAGGAAAGAGAAAAGGAGAAACTCCAGAAAAAGAAGCAAGAAGGTAAACTGTTAACTGGTAAGCAGAAAGAAGAAGCCCGCCGGTTGGAGGCAATGAGGAGGCAGATTCTCAATAACACAGGGGGTGTGACTCTTCCTACTGGGGACACTGGTGCTCCAGCCAAAAAACCCATATATCAAACAAAGAAGTTAAAACCAAACAATCGTAATCAGAATGGTGCTCCTGCTGTTCAGACAGCTGAAACTATTGAAGTAAAGGAGACTACCACTGATGTGAGTTCAGAGGAAACAAAAAAGGTTGAAGAAGTGGAGACCATGCATATGGAGGACAAAGTTAAACCTCCTGAAGCTGTTGAAGAGGATGGAGTGGAAGAAGATGATGACGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTAAATGCTAAAGGCGCATTTGCTGATGAAGAGGCTGACTCAGAGCCTGAACCAATTGTCAAAAAGGAGATTAAAAGTACAGTACCTGCTAACAATGCTGGTGCTACTAATAAAATTGTTTCTAACCCGGTGGCTGAAAAAATTGAAGATAGACAGCAGGCTGTAGACAAAAGTAGAAAGCAAGATTCAGGTTCGAAAAGAGAACAACAAAAGTCTGCGGGGCCTTCTAAGCCGAGTGATGAGAACCTTCGCTCCCCAATTTGCTGTATTATGGGACATGTGGACACTGGTAAAACCAAGCTGCTGGATTGTATTCGAGGTACTAATGTTCAAGAGGGTGAGGCTGGTGGAATCACACAACAGATTGGTGCAACATACTTTCCCGCGGAGAACATACGTGATAGAACAAAGGAGCTGAAAGCTGATGCAAAGCTGAAAGTTCCTGGTCTACTGGTTATTGATACCCCAGGGCACGAATCATTCACTAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCCATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACAATAGAATCACTCAATCTATTAAAAATGAGAAACACAGAATTCATTGTTGCCCTGAATAAGGTTGACAGGCTTTATGGGTGGAAATCATGTCGCAATGCTCCAATTGTTAAAGCAATGAAGCAGCAGTCTAAGGATGTTCAAAATGAGTTTAATATGAGGCTCATTCAGATTATTACACAATTCAAGGAACAGGGTCTAAATACTGAGTTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCAGATTTGTTATTACTATTGGTTCAGTGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGTACTGTTTTGGAGGTCAAGGTTGTTGAAGGACATGGAACTACTATTGATGTTGTTTTAGTCAATGGCATTCTTCATGAAGGAGAACAAATAGTTGTCTGTGGAATGCAGGGTCCAATTGTTACCACGATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTGCGTGTTAAGGGGACATATCTCCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAGATCACAGCTCAGGGGCTTGAACATGCTATTGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATGTTAAAGAAGTTGCTATGGAAGATATGCGGTCAGTCATGAGCAGGATTGACAGGAGCGGTGAGGGTGTTTGTGTACAAGCATCCACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACTCCGGAAGTGAATATTCCTGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATGCTACTATATTGGCTTTTGATGTCAAAGTCACTCCTGAGGCTAGGGAACTTGCAGATGAATTGGGTGTGAAAATTTTTATTGCTGATATCATTTATCATCTGTTTGATCAATTTAAAGCTTATATTGACAACATTAAGGAAGAGAAAAAGAGAGAAGCTGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAAATCTTACCGAATTGCGTCTTCAACAAGAAGGATCCAATTGTTTTGGGAGTTGATGTCCTTGAAGGCATTGCAAAGGTTGGTACTCCAATTTGTATTCCTTCCAGAGAGTTCATTGATATTGGTCGCATTGCCTCTGTTGAGAATAACCATAAACCTGTTGATTATGCAAAGAAGGGGCAGAAAGTCGCCATTAAGATTGTTGGCAGCAATCCTGAGGAGCAACAAAAAATGTTTGGGCGGCATTTTGAGATTGATGATGAACTCGTAAGCCATATTTCACGGAGATCTATCGATATACTCAAAGCTAATTATCGGGATGATCTGTCTACGGAGGAATGGAGGCTGGTCGTGAAATTGAAGAATCTTTTTAAGATACAATGA | 4008 | 0.4284 | MGRKKPTARDEENPSQQGGGKSKKKALVIDDDEYSVGTELSEEPPPAPEEKPAGKKKGKKGNAKAAQARDNDDDDDVDDDEDVPEVVFAGKKKGKSKKGGAFTGSSFGLLGDGDDDEEKSGLTGERDDEDEDEPVVSFSGKKKSSKGSKKGGGSLFTASAFDAIDDDNDNDGVEEDEPVVSFSGKKKPSKGSKKGGGSLFNASAFDAIDDDNDDEDGKDENDDVDEPVIAFTGKKKSSKGSKKGGSLFSAASFDEDSVSVPESAKGGDGKDEDDDSIVAFSGKKKSSKKKSSSTAAKVRDESVDIVEPEQPSVGISNTDADNSNVNKSEEITETSKNKKKNKKKSGRTAQEEEDLDKILAELGEGPSVAKPAAPLPQDDKVQPTPEVGSAADASGEKEGEEETVESAAAKKKKKKKEKEKEKKAAAAAAAATAAGGAPENETVEVKAETIESKKNESKTKAADKKVPKHVREMQEALARRKEAEERKKREEEEKLRKEEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRRQILNNTGGVTLPTGDTGAPAKKPIYQTKKLKPNNRNQNGAPAVQTAETIEVKETTTDVSSEETKKVEEVETMHMEDKVKPPEAVEEDGVEEDDDEDEWDAKSWDDVNLNAKGAFADEEADSEPEPIVKKEIKSTVPANNAGATNKIVSNPVAEKIEDRQQAVDKSRKQDSGSKREQQKSAGPSKPSDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKSCRNAPIVKAMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGILHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKEVAMEDMRSVMSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSGISIGPVHKKDVMKASVMLEKKREYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVLEGIAKVGTPICIPSREFIDIGRIASVENNHKPVDYAKKGQKVAIKIVGSNPEEQQKMFGRHFEIDDELVSHISRRSIDILKANYRDDLSTEEWRLVVKLKNLFKIQ. | 1336 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g07606 | 1335 | Gene3D | - | 737 | 965 | IPR027417 | - | |
Seca7g07606 | 1335 | CDD | aeIF5B_II | 967 | 1077 | - | - | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 1 | 679 | - | - | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 709 | 727 | - | - | |
Seca7g07606 | 1335 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 743 | 1034 | IPR027417 | - | |
Seca7g07606 | 1335 | FunFam | eukaryotic translation initiation factor 5B | 966 | 1085 | - | - | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 265 | 282 | - | - | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 393 | 412 | - | - | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 444 | 551 | - | - | |
Seca7g07606 | 1335 | Gene3D | Translation factors | 966 | 1086 | - | - | |
Seca7g07606 | 1335 | FunFam | Eukaryotic translation initiation factor 5B | 1085 | 1191 | - | - | |
Seca7g07606 | 1335 | NCBIfam | small GTP-binding protein domain | 748 | 872 | IPR005225 | GO:0005525 | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 207 | 223 | - | - | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 582 | 606 | - | - | |
Seca7g07606 | 1335 | Gene3D | Translation factors | 1198 | 1335 | - | - | |
Seca7g07606 | 1335 | Pfam | Elongation factor Tu domain 2 | 982 | 1057 | IPR004161 | GO:0005525 | |
Seca7g07606 | 1335 | Coils | Coil | 466 | 537 | - | - | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 311 | 330 | - | - | |
Seca7g07606 | 1335 | Gene3D | - | 1087 | 1191 | IPR036925 | - | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 693 | 744 | - | - | |
Seca7g07606 | 1335 | FunFam | Eukaryotic translation initiation factor 5B | 1198 | 1335 | - | - | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 345 | 360 | - | - | |
Seca7g07606 | 1335 | Coils | Coil | 397 | 429 | - | - | |
Seca7g07606 | 1335 | CDD | IF2_eIF5B | 746 | 956 | - | - | |
Seca7g07606 | 1335 | FunFam | Eukaryotic translation initiation factor 5B | 737 | 965 | - | - | |
Seca7g07606 | 1335 | Pfam | Elongation factor Tu GTP binding domain | 747 | 955 | IPR000795 | GO:0003924|GO:0005525 | |
Seca7g07606 | 1335 | Pfam | Translation-initiation factor 2 | 1070 | 1184 | IPR023115 | - | |
Seca7g07606 | 1335 | CDD | IF2_aeIF5B_IV | 1206 | 1301 | - | - | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 638 | 654 | - | - | |
Seca7g07606 | 1335 | PRINTS | GTP-binding elongation factor signature | 747 | 760 | IPR000795 | GO:0003924|GO:0005525 | |
Seca7g07606 | 1335 | PRINTS | GTP-binding elongation factor signature | 863 | 872 | IPR000795 | GO:0003924|GO:0005525 | |
Seca7g07606 | 1335 | PRINTS | GTP-binding elongation factor signature | 827 | 838 | IPR000795 | GO:0003924|GO:0005525 | |
Seca7g07606 | 1335 | PRINTS | GTP-binding elongation factor signature | 811 | 821 | IPR000795 | GO:0003924|GO:0005525 | |
Seca7g07606 | 1335 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 284 | 1332 | IPR015760 | - | |
Seca7g07606 | 1335 | SUPERFAMILY | Translation proteins | 1202 | 1334 | IPR009000 | - | |
Seca7g07606 | 1335 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 743 | 959 | IPR000795 | GO:0003924|GO:0005525 | |
Seca7g07606 | 1335 | MobiDBLite | consensus disorder prediction | 607 | 637 | - | - | |
Seca7g07606 | 1335 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 1068 | 1197 | IPR036925 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g07606 | Seca-Chr7 | 179872637 | 179884380 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g07606 | 172 | 1335 | Eukaryotic Initiation Factors Gene Family | AT1G76810 | 66.079 | 0.0 | 1239 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g07606 | K03243 | - | gmx:100814875 | 1734.92 |