Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07606 ATGGGGAGGAAGAAGCCGACAGCACGGGACGAAGAGAATCCCTCGCAGCAAGGTGGTGGGAAATCGAAGAAGAAAGCTCTCGTCATCGACGATGATGAGTACTCTGTCGGAACCGAGCTCTCGGAGGAGCCTCCCCCTGCACCGGAAGAGAAGCCTGCTGGGAAGAAGAAAGGTAAAAAAGGTAACGCTAAAGCTGCGCAAGCTAGAGATAATGATGATGATGATGATGTTGATGACGATGAGGATGTCCCTGAGGTTGTGTTTGCTGGGAAAAAGAAGGGGAAATCGAAGAAGGGTGGTGCGTTCACTGGGTCTAGCTTTGGTTTGCTTGGTGATGGTGACGATGATGAAGAGAAATCGGGGTTAACCGGTGAACGAGATGACGAGGATGAGGATGAACCGGTGGTTAGTTTTTCAGGTAAAAAGAAGTCTTCAAAGGGTTCGAAGAAAGGCGGTGGTAGTTTGTTCACTGCTTCAGCTTTTGATGCTATTGATGATGATAACGATAACGATGGTGTGGAGGAGGATGAACCTGTGGTTAGTTTTTCAGGTAAGAAGAAGCCCTCAAAGGGTTCGAAGAAAGGCGGTGGTAGTTTGTTCAATGCCTCGGCTTTTGATGCTATTGATGATGATAATGATGATGAGGATGGCAAAGACGAGAATGATGATGTTGATGAACCTGTTATTGCTTTTACAGGGAAGAAGAAGTCTTCCAAAGGAAGCAAGAAGGGTGGTTCTTTGTTTTCAGCTGCTAGTTTTGATGAGGATAGTGTTTCTGTACCTGAGTCTGCTAAAGGTGGTGATGGCAAGGATGAGGATGACGATTCTATAGTTGCGTTTTCAGGTAAAAAGAAGTCTTCCAAAAAGAAAAGCAGTAGTACTGCTGCCAAAGTGAGGGATGAAAGTGTAGACATTGTTGAGCCTGAGCAGCCTAGTGTTGGAATTAGTAATACTGATGCTGACAACAGCAACGTTAATAAGAGTGAAGAGATAACTGAAACTTCCAAAAATAAGAAGAAGAATAAGAAGAAGAGTGGAAGAACTGCCCAAGAGGAGGAAGATTTAGATAAGATTCTTGCAGAGCTTGGTGAGGGCCCTTCTGTAGCAAAACCTGCTGCTCCTCTACCGCAGGATGATAAAGTTCAGCCTACTCCGGAAGTAGGTTCTGCTGCTGATGCTTCAGGGGAAAAGGAGGGAGAAGAGGAGACTGTAGAGTCAGCTGCTGCAAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAAAAGGCAGCTGCAGCTGCAGCAGCAGCAACAGCAGCTGGGGGTGCACCAGAAAATGAAACCGTAGAAGTTAAAGCTGAGACAATTGAATCAAAGAAGAATGAGTCAAAGACTAAAGCAGCTGACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTGGCTAGAAGAAAAGAGGCTGAAGAAAGGAAGAAAAGAGAAGAGGAGGAGAAGTTAAGGAAGGAAGAAGAGGAGCGACGTAGGCAAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAGACGCAGAAAGAAGGAAAGAGAAAAGGAGAAACTCCAGAAAAAGAAGCAAGAAGGTAAACTGTTAACTGGTAAGCAGAAAGAAGAAGCCCGCCGGTTGGAGGCAATGAGGAGGCAGATTCTCAATAACACAGGGGGTGTGACTCTTCCTACTGGGGACACTGGTGCTCCAGCCAAAAAACCCATATATCAAACAAAGAAGTTAAAACCAAACAATCGTAATCAGAATGGTGCTCCTGCTGTTCAGACAGCTGAAACTATTGAAGTAAAGGAGACTACCACTGATGTGAGTTCAGAGGAAACAAAAAAGGTTGAAGAAGTGGAGACCATGCATATGGAGGACAAAGTTAAACCTCCTGAAGCTGTTGAAGAGGATGGAGTGGAAGAAGATGATGACGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTAAATGCTAAAGGCGCATTTGCTGATGAAGAGGCTGACTCAGAGCCTGAACCAATTGTCAAAAAGGAGATTAAAAGTACAGTACCTGCTAACAATGCTGGTGCTACTAATAAAATTGTTTCTAACCCGGTGGCTGAAAAAATTGAAGATAGACAGCAGGCTGTAGACAAAAGTAGAAAGCAAGATTCAGGTTCGAAAAGAGAACAACAAAAGTCTGCGGGGCCTTCTAAGCCGAGTGATGAGAACCTTCGCTCCCCAATTTGCTGTATTATGGGACATGTGGACACTGGTAAAACCAAGCTGCTGGATTGTATTCGAGGTACTAATGTTCAAGAGGGTGAGGCTGGTGGAATCACACAACAGATTGGTGCAACATACTTTCCCGCGGAGAACATACGTGATAGAACAAAGGAGCTGAAAGCTGATGCAAAGCTGAAAGTTCCTGGTCTACTGGTTATTGATACCCCAGGGCACGAATCATTCACTAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCCATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACAATAGAATCACTCAATCTATTAAAAATGAGAAACACAGAATTCATTGTTGCCCTGAATAAGGTTGACAGGCTTTATGGGTGGAAATCATGTCGCAATGCTCCAATTGTTAAAGCAATGAAGCAGCAGTCTAAGGATGTTCAAAATGAGTTTAATATGAGGCTCATTCAGATTATTACACAATTCAAGGAACAGGGTCTAAATACTGAGTTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCAGATTTGTTATTACTATTGGTTCAGTGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGTACTGTTTTGGAGGTCAAGGTTGTTGAAGGACATGGAACTACTATTGATGTTGTTTTAGTCAATGGCATTCTTCATGAAGGAGAACAAATAGTTGTCTGTGGAATGCAGGGTCCAATTGTTACCACGATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTGCGTGTTAAGGGGACATATCTCCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAGATCACAGCTCAGGGGCTTGAACATGCTATTGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATGTTAAAGAAGTTGCTATGGAAGATATGCGGTCAGTCATGAGCAGGATTGACAGGAGCGGTGAGGGTGTTTGTGTACAAGCATCCACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACTCCGGAAGTGAATATTCCTGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATGCTACTATATTGGCTTTTGATGTCAAAGTCACTCCTGAGGCTAGGGAACTTGCAGATGAATTGGGTGTGAAAATTTTTATTGCTGATATCATTTATCATCTGTTTGATCAATTTAAAGCTTATATTGACAACATTAAGGAAGAGAAAAAGAGAGAAGCTGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAAATCTTACCGAATTGCGTCTTCAACAAGAAGGATCCAATTGTTTTGGGAGTTGATGTCCTTGAAGGCATTGCAAAGGTTGGTACTCCAATTTGTATTCCTTCCAGAGAGTTCATTGATATTGGTCGCATTGCCTCTGTTGAGAATAACCATAAACCTGTTGATTATGCAAAGAAGGGGCAGAAAGTCGCCATTAAGATTGTTGGCAGCAATCCTGAGGAGCAACAAAAAATGTTTGGGCGGCATTTTGAGATTGATGATGAACTCGTAAGCCATATTTCACGGAGATCTATCGATATACTCAAAGCTAATTATCGGGATGATCTGTCTACGGAGGAATGGAGGCTGGTCGTGAAATTGAAGAATCTTTTTAAGATACAATGA 4008 0.4284 MGRKKPTARDEENPSQQGGGKSKKKALVIDDDEYSVGTELSEEPPPAPEEKPAGKKKGKKGNAKAAQARDNDDDDDVDDDEDVPEVVFAGKKKGKSKKGGAFTGSSFGLLGDGDDDEEKSGLTGERDDEDEDEPVVSFSGKKKSSKGSKKGGGSLFTASAFDAIDDDNDNDGVEEDEPVVSFSGKKKPSKGSKKGGGSLFNASAFDAIDDDNDDEDGKDENDDVDEPVIAFTGKKKSSKGSKKGGSLFSAASFDEDSVSVPESAKGGDGKDEDDDSIVAFSGKKKSSKKKSSSTAAKVRDESVDIVEPEQPSVGISNTDADNSNVNKSEEITETSKNKKKNKKKSGRTAQEEEDLDKILAELGEGPSVAKPAAPLPQDDKVQPTPEVGSAADASGEKEGEEETVESAAAKKKKKKKEKEKEKKAAAAAAAATAAGGAPENETVEVKAETIESKKNESKTKAADKKVPKHVREMQEALARRKEAEERKKREEEEKLRKEEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRRQILNNTGGVTLPTGDTGAPAKKPIYQTKKLKPNNRNQNGAPAVQTAETIEVKETTTDVSSEETKKVEEVETMHMEDKVKPPEAVEEDGVEEDDDEDEWDAKSWDDVNLNAKGAFADEEADSEPEPIVKKEIKSTVPANNAGATNKIVSNPVAEKIEDRQQAVDKSRKQDSGSKREQQKSAGPSKPSDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKSCRNAPIVKAMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGILHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKEVAMEDMRSVMSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSGISIGPVHKKDVMKASVMLEKKREYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVLEGIAKVGTPICIPSREFIDIGRIASVENNHKPVDYAKKGQKVAIKIVGSNPEEQQKMFGRHFEIDDELVSHISRRSIDILKANYRDDLSTEEWRLVVKLKNLFKIQ. 1336
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07606 1335 Gene3D - 737 965 IPR027417 -
Seca7g07606 1335 CDD aeIF5B_II 967 1077 - -
Seca7g07606 1335 MobiDBLite consensus disorder prediction 1 679 - -
Seca7g07606 1335 MobiDBLite consensus disorder prediction 709 727 - -
Seca7g07606 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 1034 IPR027417 -
Seca7g07606 1335 FunFam eukaryotic translation initiation factor 5B 966 1085 - -
Seca7g07606 1335 MobiDBLite consensus disorder prediction 265 282 - -
Seca7g07606 1335 MobiDBLite consensus disorder prediction 393 412 - -
Seca7g07606 1335 MobiDBLite consensus disorder prediction 444 551 - -
Seca7g07606 1335 Gene3D Translation factors 966 1086 - -
Seca7g07606 1335 FunFam Eukaryotic translation initiation factor 5B 1085 1191 - -
Seca7g07606 1335 NCBIfam small GTP-binding protein domain 748 872 IPR005225 GO:0005525
Seca7g07606 1335 MobiDBLite consensus disorder prediction 207 223 - -
Seca7g07606 1335 MobiDBLite consensus disorder prediction 582 606 - -
Seca7g07606 1335 Gene3D Translation factors 1198 1335 - -
Seca7g07606 1335 Pfam Elongation factor Tu domain 2 982 1057 IPR004161 GO:0005525
Seca7g07606 1335 Coils Coil 466 537 - -
Seca7g07606 1335 MobiDBLite consensus disorder prediction 311 330 - -
Seca7g07606 1335 Gene3D - 1087 1191 IPR036925 -
Seca7g07606 1335 MobiDBLite consensus disorder prediction 693 744 - -
Seca7g07606 1335 FunFam Eukaryotic translation initiation factor 5B 1198 1335 - -
Seca7g07606 1335 MobiDBLite consensus disorder prediction 345 360 - -
Seca7g07606 1335 Coils Coil 397 429 - -
Seca7g07606 1335 CDD IF2_eIF5B 746 956 - -
Seca7g07606 1335 FunFam Eukaryotic translation initiation factor 5B 737 965 - -
Seca7g07606 1335 Pfam Elongation factor Tu GTP binding domain 747 955 IPR000795 GO:0003924|GO:0005525
Seca7g07606 1335 Pfam Translation-initiation factor 2 1070 1184 IPR023115 -
Seca7g07606 1335 CDD IF2_aeIF5B_IV 1206 1301 - -
Seca7g07606 1335 MobiDBLite consensus disorder prediction 638 654 - -
Seca7g07606 1335 PRINTS GTP-binding elongation factor signature 747 760 IPR000795 GO:0003924|GO:0005525
Seca7g07606 1335 PRINTS GTP-binding elongation factor signature 863 872 IPR000795 GO:0003924|GO:0005525
Seca7g07606 1335 PRINTS GTP-binding elongation factor signature 827 838 IPR000795 GO:0003924|GO:0005525
Seca7g07606 1335 PRINTS GTP-binding elongation factor signature 811 821 IPR000795 GO:0003924|GO:0005525
Seca7g07606 1335 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 284 1332 IPR015760 -
Seca7g07606 1335 SUPERFAMILY Translation proteins 1202 1334 IPR009000 -
Seca7g07606 1335 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 743 959 IPR000795 GO:0003924|GO:0005525
Seca7g07606 1335 MobiDBLite consensus disorder prediction 607 637 - -
Seca7g07606 1335 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1068 1197 IPR036925 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca7g07606 Seca-Chr7 179872637 179884380 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07606 172 1335 Eukaryotic Initiation Factors Gene Family AT1G76810 66.079 0.0 1239
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07606 K03243 - gmx:100814875 1734.92