Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07601 ATGCTAGGGGACTCAACTGTGTTGAGAGGAGGAGGTGGTGGAGAAGGTGGTGGTTCCGGTGATGTAGTAGCGGCGGTGACATCATCAGCAGCAGCACCAGCTGCAACGACAACCGTTGGATCAAATTCAGGCGATGAAGAGAGAGGAAGAATCGACGAAGGAGAACGTAGCTTCGGTGGCAACCGGTGGCCACGACAAGAGACTTTGGCGCTGTTAAGGATACGGTCAGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAAGGTCCCTTGTGGGAAGAAGTTTCTAGGAAATTGGCAGAGCTTGGTTATCACAGAAATGCCAAGAAATGCAAAGAGAAATTTGAAAACGTGTACAAGTACCACAGGAGAACCAAAGAAGGTCGAACTGGGAAATCAGATGGGAAAACATATCGTTTCTTTGATCAATTAGAGGCCCTTGAGAATCACCCTCCAATTCAATCTCCCAACTCATCAAAACCACCACCACCACCACCATCACTAGTAGTAACAACCACCACCACAACAACAACAACAAATTCTTCAGCAGTGTCATCACTCCCACTCCCAACAACAACAACAACAGTGCCAATGCCACCACCACAAGTGGCTAACACCACCACTACTACTACTGTCCCTCATGTAACTGTTCCATCAACAACCACACTCCCTATAGCAATGCCACAAGGCATTGCTGTAACCACCACCACTCCACCAATGAATCTCACAATCCCTTCTTACCCTTCTCCAACAAACTTATTCCCACCATCCACAACAAACCCTACACCTCACACAACAATCCCAATCTCCTTCCCTAACATCCCGACAGATCTGTTATCCAATTCCACCTCATCCTCAACCTCATCCGATGAAACACTAGAAGGAAGGCGCAAGAGGAAACGCAAATGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTCATAGAGAAACAAGAGGAATTACAAAAGAGATTCTTGGAAGCAATAGAGAAACGAGAACGTGACAGAATGGTTAGAGAAGAAGCATGGAGAGTACAAGAGATGCAAAGAATCAATAGAGAAAGAGAAATTCTAGCACAAGAAAGATCCATAGCTGCAGCCAAGGATGCTGCAGTAATGTCATTCTTGCAAAAAATAGCTGAACAGCAAAATCTTGGACAAGCATTGACTAACATCAACATCGTACAACCACCACAACCACAACAACCACAACCAGTGTCACAGCCAATTGCAACAACACCAACACCACAACCACAATCAGTGCAACAACAACAACAACCAACAGCACCACCACCAGTTGCTCTTGCTCAGCCTGTGATGTCAGCATTGGTCCCACAACAAGTAGTGACCAATATGGAAATTGTAAAAGCTGGTGGTGGTGGTGATAATGGGGAGAATTTGATGGGGGCGAGTTCTTCGAGGTGGCCAAAAGTGGAGGTTGAAGCACTGATAAAGCTGAGAACAAATCTTGATGCTAAGTACCAAGAGAATGGACCGAAAGGTCCTCTTTGGGAGGAGATTTCATCCTCCATGAGGAAGCTTGGGTACAACAGGAATGCCAAAAGGTGCAAAGAAAAATGGGAGAATATCAATAAGTACTTCAAGAAAGTCAAGGAAAGCAACAAGAAGAGACCAGAAGATTCCAAGACATGTCCTTATTTTCACCAATTGGATGCTCTATACAGGGAAAAGAATAAGCTTGACAGCCCTTCCATGAAGCCGGAAAACATGGGGCCGCCGTTGATGGTGAGGCCGGAGCAGCAATGGCCACCACAGCAGGATGTGACCATGGAAGACGTGGAGAGGCATCATCATCATGAAGATAATGAAGATGATAGGGATGGAGAAGAGGAAGAAGAAGATGATGATGAAGAGGATGAAGGAAGTGGTGATGGTGGAAACTATGAGATAGTGGCAAGCAAGCCTGCTGCTGCAACAGCATCAGCTGAGTAG 1953 0.4593 MLGDSTVLRGGGGGEGGGSGDVVAAVTSSAAAPAATTTVGSNSGDEERGRIDEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHRRTKEGRTGKSDGKTYRFFDQLEALENHPPIQSPNSSKPPPPPPSLVVTTTTTTTTTNSSAVSSLPLPTTTTTVPMPPPQVANTTTTTTVPHVTVPSTTTLPIAMPQGIAVTTTTPPMNLTIPSYPSPTNLFPPSTTNPTPHTTIPISFPNIPTDLLSNSTSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIEKQEELQKRFLEAIEKRERDRMVREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQALTNINIVQPPQPQQPQPVSQPIATTPTPQPQSVQQQQQPTAPPPVALAQPVMSALVPQQVVTNMEIVKAGGGGDNGENLMGASSSRWPKVEVEALIKLRTNLDAKYQENGPKGPLWEEISSSMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKLDSPSMKPENMGPPLMVRPEQQWPPQQDVTMEDVERHHHHEDNEDDRDGEEEEEDDDEEDEGSGDGGNYEIVASKPAAATASAE. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07601 650 MobiDBLite consensus disorder prediction 275 299 - -
Seca7g07601 650 CDD GT1 61 126 - -
Seca7g07601 650 MobiDBLite consensus disorder prediction 275 290 - -
Seca7g07601 650 MobiDBLite consensus disorder prediction 30 44 - -
Seca7g07601 650 MobiDBLite consensus disorder prediction 395 433 - -
Seca7g07601 650 SMART sant 59 121 IPR001005 -
Seca7g07601 650 SMART sant 471 533 IPR001005 -
Seca7g07601 650 MobiDBLite consensus disorder prediction 45 60 - -
Seca7g07601 650 FunFam Trihelix transcription factor GT-2 63 124 - -
Seca7g07601 650 Gene3D - 475 536 - -
Seca7g07601 650 Gene3D - 63 124 - -
Seca7g07601 650 MobiDBLite consensus disorder prediction 155 169 - -
Seca7g07601 650 CDD GT1 473 538 - -
Seca7g07601 650 MobiDBLite consensus disorder prediction 170 215 - -
Seca7g07601 650 MobiDBLite consensus disorder prediction 1 62 - -
Seca7g07601 650 MobiDBLite consensus disorder prediction 398 412 - -
Seca7g07601 650 ProSiteProfiles Myb-like domain profile. 473 531 IPR001005 -
Seca7g07601 650 ProSiteProfiles Myb-like domain profile. 61 119 IPR001005 -
Seca7g07601 650 MobiDBLite consensus disorder prediction 566 650 - -
Seca7g07601 650 MobiDBLite consensus disorder prediction 612 631 - -
Seca7g07601 650 FunFam Trihelix transcription factor GT-2 475 536 - -
Seca7g07601 650 PANTHER FI21293P1 41 614 - -
Seca7g07601 650 Pfam Myb/SANT-like DNA-binding domain 473 560 IPR044822 -
Seca7g07601 650 Pfam Myb/SANT-like DNA-binding domain 61 147 IPR044822 -
Seca7g07601 650 MobiDBLite consensus disorder prediction 413 430 - -
Seca7g07601 650 MobiDBLite consensus disorder prediction 596 611 - -
Seca7g07601 650 MobiDBLite consensus disorder prediction 149 215 - -
Seca7g07601 650 Coils Coil 304 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07601 Seca-Chr7 179803941 179807082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07601 55 589 Trihelix Transcription Factor Family AT1G76880 53.501 2.27e-166 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca7g07601 Myb_DNA-bind_4 1.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07601 - - pvu:PHAVU_007G079700g 701.434