Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07600 ATGCAGCAGCTTGCAGACTCAGCAGTGTTGGAGACCTCCTCCTCCGGGGAGGCCTTACCGGCGGCGCATGATGGTGCAAACGGCGGAGATGTGATTGCTATGGATGAAGATCATAAAGGAAACACGAGAGATGGAGAAGAAGGTGGTGATAAGATGATCAACGGTGGAGGTGGAGGAGGAGGAGGAAACCGGTGGCCCCGGCAAGAAACCTTAGCTCTGTTGAAGATAAGGTCTGATATGGATGCTGTGTTTCGAGATTCAAGCCTTAAGGGTCCACTCTGGGAACAAGTTTCAAGGAAACTAGGAGAACTGGGTTATCAACGAAGCGCAAAGAAGTGTAAGGAGAAGTTTGAGAATGTGTACAAGTATCACAAGAGAACCAAAGAGAGTAGAAGTGGGAAATCAGAAGGGAAAACATATAGATTCTTTGATCAATTACAAGCCCTTGAGAATCATCATCAATTCACAGTCTCTTTCTCTCCAAAACCACAACCAACAACAAACACAGTGGCATCATTACCAGCAAAGCCTAGTGATACTACTACACCAATCTCTTATGTCACCACAAACCCTACTCCAATCATTTCTCCTTCTCCACCCACCAATGCTGCTATTACCACCACCATCACCTCTCCAACTCCAACAGTAACAACCAACCCTAAAAACCCAACACCACAAAACAACATTAATGCCGTTCCATGTTCCTTGCCTAACATGAACAACCTCTTCTCAACCACCACCACCACAACCTCCACCTCTTCTTCCACTGCTTCTGATGAGGACTTGGAAGAGAAATACAGAAAGAAGAGAAAATGGAAGGAGTATTTCAGGAGGCTGACAAGACAGGTGTTAGCAAAACAAGAGGAAATGCAAAAGAGGTTTTTAGAAGCCATAGACAAACGTGAGAGAGAACACATGGCAACACAAGACGCTTGGAGGATGCAAGAAATGGCAAGAATCAATAGAGAACATGAACTTCTTGTCCAAGAACGTTCAACAGCAGCAGCAAAAAATGCAGCAGTTATTGCTTTCTTGCAAAAACTCTCAGGCCACCAACAAAATCCCACAACACCACCTCCCAATATCCTCCAACCACCACAACAACCACCGCCACCACCACCACAACCACAACAGCAACAAGTTCAGCAGCAGATTATTATTCCACAACCACCAATGGTATTACCAAACAACAATGAAATTCAGAAAATGAATAATGGTCATCATCACAGTAATGCTGCTACTTCTCCTTCTTTCAACTCTTCAAGATGGCCAAAAGCTGAAGTTCATGCATTGATAAGGCTGAGGACGAGTTTAGAACCTAAGTATCAAGAGAATGGACCAAAAGCTCCATTGTGGGAAGATATATCAGCTGGGATGCAGAGGCTTGGATATAACAGGAGTTCCAAAAGGTGTAAAGAAAAATGGGAGAATATTAACAAGTACTTCAAGAAAGTCAAGGAAAGTAACAAGCAAAGGCGTGAGGATAGTAAGACTTGTCCTTATTTCCATGAGCTTGAGGCTTTATACAAAGAAAAGGGAAAAACAGTACAGAACCCTTTTATGAGACCGAATGAGATGATGGAGCCATTGATGGTGCAACCGGAACAGCAATGGAGGCCTCCTCCTCATCAATATGAAGAGGAGAAGAAGAAGAATAATAATGAAATGAAAGAAAGAGAGGGAGATAGCATGGAAGAAGATTATGATGATGAAGATGATGAAGAAGAAGAAGAAGGAGATAGCAATATGGAAGAAGGAGAAGGAGGGAACGGTTATGAGATTGTGACAAATAAGCTTTCTTCAGTGGACACAGTTGAATGA 1821 0.4316 MQQLADSAVLETSSSGEALPAAHDGANGGDVIAMDEDHKGNTRDGEEGGDKMINGGGGGGGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEQVSRKLGELGYQRSAKKCKEKFENVYKYHKRTKESRSGKSEGKTYRFFDQLQALENHHQFTVSFSPKPQPTTNTVASLPAKPSDTTTPISYVTTNPTPIISPSPPTNAAITTTITSPTPTVTTNPKNPTPQNNINAVPCSLPNMNNLFSTTTTTTSTSSSTASDEDLEEKYRKKRKWKEYFRRLTRQVLAKQEEMQKRFLEAIDKREREHMATQDAWRMQEMARINREHELLVQERSTAAAKNAAVIAFLQKLSGHQQNPTTPPPNILQPPQQPPPPPPQPQQQQVQQQIIIPQPPMVLPNNNEIQKMNNGHHHSNAATSPSFNSSRWPKAEVHALIRLRTSLEPKYQENGPKAPLWEDISAGMQRLGYNRSSKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELEALYKEKGKTVQNPFMRPNEMMEPLMVQPEQQWRPPPHQYEEEKKKNNNEMKEREGDSMEEDYDDEDDEEEEEGDSNMEEGEGGNGYEIVTNKLSSVDTVE. 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07600 606 MobiDBLite consensus disorder prediction 158 177 - -
Seca7g07600 606 MobiDBLite consensus disorder prediction 531 606 - -
Seca7g07600 606 ProSiteProfiles Myb-like domain profile. 415 479 IPR001005 -
Seca7g07600 606 PANTHER FI21293P1 27 556 - -
Seca7g07600 606 FunFam Trihelix transcription factor GT-2 423 484 - -
Seca7g07600 606 MobiDBLite consensus disorder prediction 358 378 - -
Seca7g07600 606 MobiDBLite consensus disorder prediction 1 66 - -
Seca7g07600 606 MobiDBLite consensus disorder prediction 541 561 - -
Seca7g07600 606 Gene3D - 423 484 - -
Seca7g07600 606 Gene3D - 65 126 - -
Seca7g07600 606 MobiDBLite consensus disorder prediction 350 421 - -
Seca7g07600 606 MobiDBLite consensus disorder prediction 379 421 - -
Seca7g07600 606 Pfam Myb/SANT-like DNA-binding domain 421 508 IPR044822 -
Seca7g07600 606 Pfam Myb/SANT-like DNA-binding domain 63 149 IPR044822 -
Seca7g07600 606 ProSiteProfiles Myb-like domain profile. 63 121 IPR001005 -
Seca7g07600 606 FunFam Trihelix transcription factor GT-2 65 126 - -
Seca7g07600 606 CDD GT1 421 486 - -
Seca7g07600 606 MobiDBLite consensus disorder prediction 562 584 - -
Seca7g07600 606 CDD GT1 63 128 - -
Seca7g07600 606 SMART sant 61 123 IPR001005 -
Seca7g07600 606 SMART sant 419 481 IPR001005 -
Seca7g07600 606 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07600 Seca-Chr7 179767469 179769935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07600 55 537 Trihelix Transcription Factor Family AT1G76890 51.195 6.92e-148 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca7g07600 Myb_DNA-bind_4 1.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07600 - - gmx:100799041 670.618