Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07583 ATGTCTCACAGGAAGTTCGAGCACCCCAGGCACGGGTCACTGGGATTTCTCCCTAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGGTGGAATTTTTACTCATGCAGTGAAGGCATTCCCTAAGGATGACCCAAGCAAGGCACCCAAGCTTACTGCCTTCTTGGGTTACAAGGCTGGTATGACTCATATTGTGAGAGAGGTCGAGAAACCTGGATCAAAGCTTCACAAGAAGGAGACTTGCGAGCCAGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCTTCGAACATTGAACACTGTATGGACTCAGCATTTGAGTGAGGAAGTGAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACCAAGTACTCAAAGCAGTATGAAACTGAAGAAGGGAAGAAAAGCATTCAGTCACAGCTGGAGAAGCTGAAGAAGTATGCAACTGTTATCCGTGTTTTGGCTCACACTCAGATCAGAAAAATGAAGGGGTTGAAGCAGAAGAAAGCCCATATCATGGAGATTCAGGTTAATGGTGGCACTATTGCACAGAAGGTTGACTTTGCTTACAGTTTCTTTGAGAAACAAGTCCCTATTGATGCTGTGTTCCAGAAGGATGAGATGATTGACATCATTGGGGTTACTAAGGGTAAGGGTTATGAAGGTGTTGTAACTCGTTGGGGTGTGACACGCCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTTGCTTGTATTGGTGCCTGGCATCCTGCTAGAGTTTCTTTCACTGTTGCCAGGGCTGGTCAGAATGGATACCACCACCGAACTGAGTTGAACAAGAAGATTTACAAGCTTGGCAAAGCTGGAGATGAGTCACATGCTGCCCTTACAGAGTTTGACAGGACTGAGAAAGACATTACCCCAATGGGTGGTTTCCCACACTACGGTATTGTGAAGGATGATTACCTCATGATCAAGGGATGCTGTGTTGGTCCCAAGAAAAGGGTCATTACATTGCGCCAATCCCTGCTTAAGCAGACATCTCGTGTTGCACTGGAGGAGATCAAACTCAAGTTCATTGACACCTCTTCAAAGTTTGGGCATGGCCGTTTCCAGACAACACAGGAGAAGCAAAAGTTCTTTGGACGCCTCAAAGCTTAA 1191 0.4652 MSHRKFEHPRHGSLGFLPRKRAARHRGKGGIFTHAVKAFPKDDPSKAPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWTQHLSEEVKRRFYKNWCKSKKKAFTKYSKQYETEEGKKSIQSQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKAGDESHAALTEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07583 396 Gene3D Translation factors 51 392 - -
Seca7g07583 396 Pfam Ribosomal protein L3 1 377 IPR000597 GO:0003735|GO:0005840|GO:0006412
Seca7g07583 396 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 391 IPR045077 GO:0003735|GO:0005840|GO:0006412
Seca7g07583 396 SUPERFAMILY Translation proteins 4 377 IPR009000 -
Seca7g07583 396 ProSitePatterns Ribosomal protein L3 signature. 219 242 IPR019926 -
Seca7g07583 396 FunFam 60S ribosomal protein L3 90 214 - -
Seca7g07583 396 FunFam Ribosomal protein L3 272 396 - -
Seca7g07583 396 Gene3D - 90 214 - -
Seca7g07583 396 Gene3D Ribosomal protein L3, domain 3 1 281 IPR044892 -
Seca7g07583 396 FunFam 60S ribosomal protein L3 51 168 - -
Seca7g07583 396 FunFam 60S ribosomal protein L3 233 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07583 Seca-Chr7 179523695 179527629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07583 1 394 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.041 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07583 K02925 - gmx:100819132 760.37