Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07581 ATGTGCTTGCTAACGGTGGCGCATCAAAGGGATTCAGGGAAGTTCATCAAGTTCACGACGGAGCACGGTGGTGATGAGGAAGTGGAAGAAGAAGACAGTTTAAGGAAAGATGATGGAAGTTCAAGAATGGCATCACAGTTCAGTTTCAGCCAAGAAAGGGAGGTGGCAATGCCAGGTTCTGTGGTTTCGGTGCCGACCCAGATGGTGTTATCTTCTGGTCAGAGTCAGACAAACACAGACTGGGTCCAAAGAAGTGGTTTTCCTTTTATGTCAGGTTTTGTCCATGTCCCTTCTTCTTCTCCTCCTTTGTATTCTTCCACTTCTGGCCCTCTTTTGGGGTCTTCCTCTGCTTCTGGTTCCTGGGTTGGGCACAAGAGAGGGCGTGAAGAAGGACCTTCTTCTCAATTGTTACAAGATGTGACCACACAACACAGAAACATTGGTGGTGATTTCAGAGTACCACACTCATCATCAGTGACAGAAGCAGCAACTGCAACTACAACTACAAGCACTGCAACACAGTCAAGTGAAGCAGCAGCATCAAGTGAAGAAACCGGTGAGAGGAGAAGGAGATACAGAGGAGTGAGGCAGAGACCTTGGGGAAAATGGGCAGCAGAGATTCGTGATCCTCACAAAGCAGCAAGAGTGTGGCTTGGAACATTTGACACTGCAGAAGCTGCAGCAAGAGCCTATGATGAAGCTGCATTGAGATTCAGAGGAAACAGAGCAAAACTCAACTTCCCTGAAAATGTTGCAGCAATGAGACCACCTTTTCAAGATTTTCCGGTGAATAGGCCTGCCGTTCCTGCTTCTCCGGCAACCCTTTATTCTCCGGCGCCGCCGCAGCTTCAGCCGCAGCAGCAACCGTTCACACCTTTTCAGGGGCCTTCTGATTTGATGAGGGACTATTGGGAATATTCTCAGCTTCTGAAAGGCTCAGGGGATTTCCATGGACTTGAGCAATGGTTCTATGAATCTCAAATGGCAGCAATTCATTCTTCTTCTTCTTCGTTGTTATCACAATCTCCATCGCTTTCTTTGTCATCTTCTTCATCACCAACTGCATTTTCACCTTCTAGTCAATTGTCCCCTGCTTCATTTCCCCTGTTTTCTGGTCAGCAAATGGGGTTTTTCCGGCCACCGGGAGACCACTATCGCGGCGGCGGAAGCGGTGGTGACGGGTCAGATTTTCCACCTTCAACATGGTCAGATACCAGTGGCTATCCTCCTCCTTCTGGTTGA 1242 0.4847 MCLLTVAHQRDSGKFIKFTTEHGGDEEVEEEDSLRKDDGSSRMASQFSFSQEREVAMPGSVVSVPTQMVLSSGQSQTNTDWVQRSGFPFMSGFVHVPSSSPPLYSSTSGPLLGSSSASGSWVGHKRGREEGPSSQLLQDVTTQHRNIGGDFRVPHSSSVTEAATATTTTSTATQSSEAAASSEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVAAMRPPFQDFPVNRPAVPASPATLYSPAPPQLQPQQQPFTPFQGPSDLMRDYWEYSQLLKGSGDFHGLEQWFYESQMAAIHSSSSSLLSQSPSLSLSSSSSPTAFSPSSQLSPASFPLFSGQQMGFFRPPGDHYRGGGSGGDGSDFPPSTWSDTSGYPPPSG. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07581 413 MobiDBLite consensus disorder prediction 342 370 - -
Seca7g07581 413 FunFam Ethylene-responsive transcription factor 2 190 249 - -
Seca7g07581 413 SMART rav1_2 191 254 IPR001471 GO:0003700|GO:0006355
Seca7g07581 413 MobiDBLite consensus disorder prediction 396 413 - -
Seca7g07581 413 PANTHER DNA-BINDING DOMAIN 162 334 IPR044808 GO:0003700|GO:0009873
Seca7g07581 413 PRINTS Ethylene responsive element binding protein signature 192 203 IPR001471 GO:0003700|GO:0006355
Seca7g07581 413 PRINTS Ethylene responsive element binding protein signature 214 230 IPR001471 GO:0003700|GO:0006355
Seca7g07581 413 MobiDBLite consensus disorder prediction 157 181 - -
Seca7g07581 413 MobiDBLite consensus disorder prediction 342 413 - -
Seca7g07581 413 MobiDBLite consensus disorder prediction 150 193 - -
Seca7g07581 413 ProSiteProfiles AP2/ERF domain profile. 191 248 IPR001471 GO:0003700|GO:0006355
Seca7g07581 413 MobiDBLite consensus disorder prediction 106 121 - -
Seca7g07581 413 SUPERFAMILY DNA-binding domain 191 249 IPR016177 GO:0003677
Seca7g07581 413 MobiDBLite consensus disorder prediction 18 50 - -
Seca7g07581 413 Pfam AP2 domain 191 240 IPR001471 GO:0003700|GO:0006355
Seca7g07581 413 Gene3D AP2/ERF domain 190 250 IPR036955 GO:0003700|GO:0006355
Seca7g07581 413 MobiDBLite consensus disorder prediction 106 136 - -
Seca7g07581 413 CDD AP2 199 250 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07581 Seca-Chr7 179489814 179493320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07581 175 289 AP2-EREBP Transcription Factor Family AT5G61890 55.556 4.80e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca7g07581 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07581 - - lja:Lj5g3v1937400.1 408.297